UPV Node Application Catalogue

This is the catalogue of available applications in the UPV's reference node for EUCAIM project.

There are two types of applications:

• Batch applications (non-interactive) launched as k8s batch jobs.
  If you still don't know how to launch one of these, see here.
• Interactive applications launched as k8s deployments/services.
  If you still don't know how to launch one of these, see here.

Batch applications

The user can launch batch jobs from any desktop in the platform. The available docker images with applications to launch are listed with the command jobman images in your desktop.

Image name (link to description)	Author	Dockerfile
ubuntu-python	UPV	Public
ubuntu-python-tensorflow	UPV	Public
ubuntu-python-pytorch	UPV	Public
extract-info-dataset	UPV	Public
mri_image_intensity_harmonization	Quibim	Private
ct_slice_thickness_harmonization	Quibim	Private
n4filter	FORTH	Public
bio_intensity_norm	FORTH	Public

Testing (still not available)

Image name (link to description)	Author	Dockerfile
nlmced	Feriel Romdhane	Private
raclahe	FORTH	Public
denoising_inhomogeneity_correction_tool	GIBI230 - HULAFE	Public
dicom-file-integrity-checker	IIS La Fe	Private
trace4harmonization	DeepTrace Technologies	Public
t2w-prostate-segmentation-tool	Quibim	Private
mammography-density-segmenter	ITI	Private

Notes about visibility

There are three levels of visibility for the batch applications:

• Public <== The container image is public, accessible for pulling to everybody even outside of the cluster.
• Private <== Only accessible for pulling the image within the cluster.
• Protected <== Only accessible for using within the cluster but not pulling the image, i.e. launching a job with it, but not pulling to see the contents**.

** Jobs can be submitted with jobman and then only a special account in the system is allowed to pull the image for the job to be launched. Moreover the user is not allowed to overwrite the entrypoint, preventing that way changing the execution code established by the developer and puting instead a code to print the contents of the image to the output log.

Interactive applications

These applications appear in the catalog of applications to deploy.

Helm chart name (link to description)	Author	Dockerfile, helm chart
desktop-tensorflow	UPV	Public
jupyter-tensorflow	UPV	Public
desktop-pytorch	UPV	Public
jupyter-pytorch	UPV	Public

Request to add or update an application

For new applications please read the developer guide.

To request the addition or update of an application choose one of the following ways:

• Open an issue by selecting one of the provided categories from the issue page and fill in the requested information.
• Fork this repository,
  add a new subdirectory in batch-applications or in interactive-applications with the name of the image for your application,
  add a README.md file in that subdirectory (use the template or simply take it from other application as an example)
  and submit a pull request with your addition.