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Missing global import for pysam in coverage.py causes NameError

Status: Open.

#415 In Ecogenomics/CheckM;

· raquellewei opened on Nov 4, 2025

ERROR: Path to the CheckM reference data must be specified when running DREP

Status: Open.

#414 In Ecogenomics/CheckM;

· ZhaosuSong opened on Sep 20, 2025

How to resolve NameError: name 'pysam' is not defined?

Status: Open.

#413 In Ecogenomics/CheckM;

· Stevenleizheng opened on Jun 30, 2025

checkm don't recognize output directory when i add plot argument

Status: Open.

#409 In Ecogenomics/CheckM;

· ShevchenkoAlla opened on Jan 31, 2025

checkm和pysam都已经安装为正确版本为什么一直报错像图下。

Status: Open.

#407 In Ecogenomics/CheckM;

· huang350 opened on Dec 13, 2024

what is genome bin for software checkM input

Status: Open.

#406 In Ecogenomics/CheckM;

· zhaolei6116 opened on Dec 3, 2024

The coverage.tsv file generated by RefineM is not available for CheckM

Status: Open.

#405 In Ecogenomics/CheckM;

· hellopeccat opened on Nov 22, 2024

A error when assess MAGs

Status: Open.

#404 In Ecogenomics/CheckM;

· liangchengbo opened on Nov 3, 2024

bioconda release broken due to setuptools not being shipped with python 3.12 anymore

Status: Open.

#403 In Ecogenomics/CheckM;

· njohner opened on Jul 31, 2024

OSError: AF_UNIX path too long

Status: Open.

#402 In Ecogenomics/CheckM;

· yqy6611 opened on Jul 28, 2024

checkm coverage NameError

Status: Open.

#401 In Ecogenomics/CheckM;

· mv-mendes opened on Jul 26, 2024

question about definition in # contigs column in ouput produced in Chdb.tsv file

Status: Open.

#399 In Ecogenomics/CheckM;

· alicia-hgim opened on Jun 27, 2024