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@FunctionLab

Troyanskaya Laboratory

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  1. onboarding onboarding Public

    Information for new Troyanskaya lab members

    4 1

  2. function function Public

    Python library for functional genomics

    Python 4 4

  3. selene selene Public

    a framework for training sequence-level deep learning networks

    Jupyter Notebook 384 92

  4. ExPecto ExPecto Public

    predicting expression effects of human genome variants ab initio from sequence

    Python 130 41

  5. sleipnir sleipnir Public

    C++ 4 1

Repositories

Showing 10 of 27 repositories
  • humanbase-docs Public Forked from readthedocs/template

    A template Sphinx repo

    FunctionLab/humanbase-docs’s past year of commit activity
    2 1,223 0 2 Updated Aug 13, 2025
  • otari Public

    code to run Otari and obtain Otari predictions

    FunctionLab/otari’s past year of commit activity
    Python 3 0 0 0 Updated Aug 5, 2025
  • otari-manuscript Public

    Code for reproducing the Otari manuscript results

    FunctionLab/otari-manuscript’s past year of commit activity
    Python 0 0 0 0 Updated Jul 28, 2025
  • asd-pheno-classes Public

    Scripts to generate figures and data.

    FunctionLab/asd-pheno-classes’s past year of commit activity
    Python 7 1 0 0 Updated Jul 15, 2025
  • onboarding Public

    Information for new Troyanskaya lab members

    FunctionLab/onboarding’s past year of commit activity
    4 1 0 0 Updated Jun 13, 2025
  • SPEEDI Public

    Single-cell Pipeline for End to End Data Integration (SPEEDI)

    FunctionLab/SPEEDI’s past year of commit activity
    R 4 0 1 0 Updated May 28, 2025
  • hedgehog-framework Public

    code to run the Hedgehog methylation sequence model ML framework: training, evaluation, and prediction

    FunctionLab/hedgehog-framework’s past year of commit activity
    Python 1 0 0 0 Updated Mar 8, 2025
  • ExPecto Public

    predicting expression effects of human genome variants ab initio from sequence

    FunctionLab/ExPecto’s past year of commit activity
    Python 130 41 15 0 Updated Jan 28, 2025
  • selene Public

    a framework for training sequence-level deep learning networks

    FunctionLab/selene’s past year of commit activity
    Jupyter Notebook 384 BSD-3-Clause-Clear 92 24 2 Updated Dec 16, 2024
  • Seal Public

    Sequence-to-expression transfer learning framework for context-specific prediction of variant effects on expression

    FunctionLab/Seal’s past year of commit activity
    Python 0 0 0 0 Updated Nov 12, 2024
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