Skip to content

Short term fix for undefined function on ARM Mac#45

Open
fgindraud wants to merge 3 commits intoGATB:masterfrom
fgindraud:master
Open

Short term fix for undefined function on ARM Mac#45
fgindraud wants to merge 3 commits intoGATB:masterfrom
fgindraud:master

Conversation

@fgindraud
Copy link
Copy Markdown

See issue GATB/bcalm#78 for context

While trying to compile for ARM Mac, got the following error in hdf5:

/Users/runner/work/kissplice-ci-clone/kissplice-ci-clone/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odeprec.c:141:8: error: call to undeclared function 'H5CX_set_apl'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
 if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
 ^
/Users/runner/work/kissplice-ci-clone/kissplice-ci-clone/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odeprec.c:195:8: error: call to undeclared function 'H5CX_set_apl'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
 if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
 ^
/Users/runner/work/kissplice-ci-clone/kissplice-ci-clone/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odeprec.c:322:8: error: call to undeclared function 'H5CX_set_apl'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
 if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
 ^

The long term fix is to use an up to date hdf5 (making it an external dependency ?). In the meantime add a header including the missing declaration.

EC2 Default User and others added 3 commits May 3, 2024 09:13
While trying to compile for ARM Mac, got the following error in hdf5:
/Users/runner/work/kissplice-ci-clone/kissplice-ci-clone/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odeprec.c:141:8: error: call to undeclared function 'H5CX_set_apl'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
^
/Users/runner/work/kissplice-ci-clone/kissplice-ci-clone/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odeprec.c:195:8: error: call to undeclared function 'H5CX_set_apl'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
^
/Users/runner/work/kissplice-ci-clone/kissplice-ci-clone/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odeprec.c:322:8: error: call to undeclared function 'H5CX_set_apl'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0)
^

The long term fix is to use an up to date hdf5 (making it an external dependency ?).
In the meantime add a header including the missing declaration.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant