Differential_expression is a bioinformatics pipeline for differential expression analysis.
The project is a bioinformatics pipeline for differential expression analysis, utilizing tools like fasterq-dump, cutadapt, FastQC, and kallisto to process RNA sequencing data. It involves reading CSV files, processing data, and merging data frames, as shown in the provided R Markdown file.
To install and setup the project, you need to have Nextflow installed, along with dependencies like FastQC, kallisto, and multiqc. You may need to install additional dependencies depending on your system configuration.
# Install Nextflow and dependencies
wget -q https://get.nextflow.io && bash nextflowPlease refer to the Nextflow documentation and the specific dependency documentation for detailed installation instructions.
To run the project, you can execute the Nextflow script.
# Run the Nextflow script
nextflow run main.nfPlease refer to the Nextflow documentation for instructions on how to run the script and configure the pipeline.
This project is under no license.
For any questions or feedback please reach out to:
- Email: GuerreroVazquez@gmail.com
- GitHub Profile: GuerreroVazquez
- LinkedIn: GuerreroVazquez Feel free to open an issue on GitHub or contact me in any way if you have any queries or suggestions.