Harrison-Oatman · Harrison-Oatman · Jan 8, 2026 · Jan 8, 2026 · Jan 8, 2026
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -0,0 +1,40 @@
+name: CI
+
+on:
+  pull_request:
+  push:
+    branches:
+      - main
+
+jobs:
+  lint:
+    name: Lint
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.x"
+      - uses: pre-commit/action@v3.0.1
+
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version:
+          - "3.11"
+    name: Check Python ${{ matrix.python-version }}
+    steps:
+      - uses: actions/checkout@v5
+
+      - name: Setup Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Download uv
+        uses: astral-sh/setup-uv@v6
+
+      - name: Test package
+        run: uv run --group test pytest
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,7 @@
+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "v0.13.2"
+    hooks:
+      - id: ruff-format
+      - id: ruff-check
+        args: [ "--fix", "--show-fixes", "--unsafe-fixes"]
diff --git a/documentation/conf.py b/documentation/conf.py
@@ -1,21 +1,22 @@
 import os
 import sys
-sys.path.insert(0, os.path.abspath('..'))
 
-project = 'PyCLM'
-copyright = '2026, Harrison-Oatman'
-author = 'Harrison-Oatman'
-release = '0.1.0'
+sys.path.insert(0, os.path.abspath(".."))
+
+project = "PyCLM"
+copyright = "2026, Harrison-Oatman"
+author = "Harrison-Oatman"
+release = "0.1.0"
 
 extensions = [
-    'myst_parser',
-    'sphinx.ext.autodoc',
-    'sphinx.ext.viewcode',
-    'sphinx.ext.napoleon',
+    "myst_parser",
+    "sphinx.ext.autodoc",
+    "sphinx.ext.viewcode",
+    "sphinx.ext.napoleon",
 ]
 
-templates_path = ['_templates']
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+templates_path = ["_templates"]
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
-html_theme = 'sphinx_rtd_theme'
-html_static_path = ['_static']
+html_theme = "sphinx_rtd_theme"
+html_static_path = ["_static"]
diff --git a/figures/bar_speed_analysis.ipynb b/figures/bar_speed_analysis.ipynb
diff --git a/figures/cell_movement_vis.ipynb b/figures/cell_movement_vis.ipynb
diff --git a/figures/movies.ipynb b/figures/movies.ipynb
diff --git a/figures/supplementary_figs.ipynb b/figures/supplementary_figs.ipynb
diff --git a/figures/tag-rfp_analysis.ipynb b/figures/tag-rfp_analysis.ipynb