chore: Sync with rhiza

[HarryCampion]

🔄 Template Synchronization

This PR synchronizes the repository with the jebel-quant/rhiza template.

📊 Change Summary

• 73 files added
• 46 files modified
• 22 files deleted

📁 Changes by Category

Configuration Files

Modified (4)

• 📝 .pre-commit-config.yaml
• 📝 Makefile
• 📝 pytest.ini
• 📝 ruff.toml

Documentation

Modified (2)

• 📝 CONTRIBUTING.md
• 📝 book/marimo/marimo.mk .rhiza/make.d/marimo.mk

Deleted (5)

• ❌ .devcontainer/README.md
• ❌ book/README.md
• ❌ book/book.mk
• ❌ book/marimo/README.md
• ❌ presentation/README.md

GitHub Actions Workflows

Added (7)

• ✅ .github/workflows/adr-create.md
• ✅ .github/workflows/ci-doctor.md
• ✅ .github/workflows/copilot-setup-steps.yml
• ✅ .github/workflows/daily-repo-status.md
• ✅ .github/workflows/issue-triage.md
• ✅ .github/workflows/renovate_rhiza_sync.yml
• ✅ .github/workflows/rhiza_gh-aw-validate.yml

Modified (13)

• 📝 .github/workflows/rhiza_benchmarks.yml
• 📝 .github/workflows/rhiza_book.yml
• 📝 .github/workflows/rhiza_ci.yml
• 📝 .github/workflows/rhiza_codeql.yml
• 📝 .github/workflows/rhiza_deptry.yml
• 📝 .github/workflows/rhiza_devcontainer.yml
• 📝 .github/workflows/rhiza_docker.yml
• 📝 .github/workflows/rhiza_marimo.yml
• 📝 .github/workflows/rhiza_pre-commit.yml
• 📝 .github/workflows/rhiza_release.yml
• 📝 .github/workflows/rhiza_security.yml
• 📝 .github/workflows/rhiza_sync.yml
• 📝 .github/workflows/rhiza_validate.yml

Deleted (1)

• ❌ .github/workflows/rhiza_mypy.yml

GitHub Configuration

Added (11)

• ✅ .github/ISSUE_TEMPLATE/bug_report.yml
• ✅ .github/ISSUE_TEMPLATE/config.yml
• ✅ .github/ISSUE_TEMPLATE/feature_request.yml
• ✅ .github/actions/configure-git-auth/README.md
• ✅ .github/actions/configure-git-auth/action.yml
• ✅ .github/hooks/hooks.json
• ✅ .github/hooks/session-end.sh
• ✅ .github/hooks/session-start.sh
• ✅ .github/pull_request_template.md
• ✅ .github/release.yml
• ✅ .github/secret_scanning.yml

Modified (4)

• 📝 .github/agents/agentic.mk .rhiza/make.d/agentic.mk
• 📝 .github/agents/analyser.md
• 📝 .github/agents/summarise.md
• 📝 .github/copilot-instructions.md

Deleted (1)

• ❌ .github/github.mk

Other

Modified (3)

• 📝 .devcontainer/bootstrap.sh
• 📝 .devcontainer/devcontainer.json
• 📝 presentation/presentation.mk .rhiza/make.d/presentation.mk

Rhiza Configuration

Added (46)

• ✅ .rhiza/INDEX.md
• ✅ .rhiza/assets/rhiza-logo.svg
• ✅ .rhiza/completions/README.md
• ✅ .rhiza/completions/rhiza-completion.bash
• ✅ .rhiza/completions/rhiza-completion.zsh
• ✅ .rhiza/docs/ASSETS.md
• ✅ .rhiza/docs/LFS.md
• ✅ .rhiza/docs/PRIVATE_PACKAGES.md
• ✅ .rhiza/docs/RELEASING.md
• ✅ .rhiza/docs/WORKFLOWS.md
• ✅ .rhiza/make.d/book.mk
• ✅ .rhiza/make.d/bootstrap.mk
• ✅ .rhiza/make.d/docker.mk
• ✅ .rhiza/make.d/docs.mk
• ✅ .rhiza/make.d/gh-aw.mk
• ✅ .rhiza/make.d/github.mk
• ✅ .rhiza/make.d/lfs.mk
• ✅ .rhiza/make.d/quality.mk
• ✅ .rhiza/make.d/releasing.mk
• ✅ .rhiza/make.d/test.mk
• ✅ .rhiza/make.d/tutorial.mk
• ✅ .rhiza/template-bundles.yml
• ✅ .rhiza/templates/minibook/custom.html.jinja2
• ✅ .rhiza/tests/README.md
• ✅ .rhiza/tests/api/conftest.py
• ✅ .rhiza/tests/api/test_gh_aw_targets.py
• ✅ .rhiza/tests/api/test_github_targets.py
• ✅ .rhiza/tests/api/test_makefile_api.py
• ✅ .rhiza/tests/deps/test_dependency_health.py
• ✅ .rhiza/tests/integration/test_book_targets.py
• ✅ .rhiza/tests/integration/test_lfs.py
• ✅ .rhiza/tests/integration/test_sbom.py
• ✅ .rhiza/tests/integration/test_test_mk.py
• ✅ .rhiza/tests/integration/test_virtual_env_unexport.py
• ✅ .rhiza/tests/security/__init__.py
• ✅ .rhiza/tests/security/test_security_patterns.py
• ✅ .rhiza/tests/stress/README.md
• ✅ .rhiza/tests/stress/__init__.py
• ✅ .rhiza/tests/stress/conftest.py
• ✅ .rhiza/tests/stress/test_git_stress.py
• ✅ .rhiza/tests/stress/test_makefile_stress.py
• ✅ .rhiza/tests/structure/test_lfs_structure.py
• ✅ .rhiza/tests/structure/test_project_layout.py
• ✅ .rhiza/tests/structure/test_template_bundles.py
• ✅ .rhiza/tests/sync/conftest.py
• ✅ .rhiza/tests/test_utils.py

Modified (11)

• 📝 .rhiza/.cfg.toml
• 📝 .rhiza/.env
• 📝 .rhiza/.rhiza-version
• 📝 .rhiza/docs/CONFIG.md
• 📝 .rhiza/history
• 📝 .rhiza/make.d/01-custom-env.mk .rhiza/make.d/custom-env.mk
• 📝 .rhiza/make.d/10-custom-task.mk .rhiza/make.d/custom-task.mk
• 📝 .rhiza/make.d/README.md
• 📝 .rhiza/requirements/tests.txt
• 📝 .rhiza/requirements/tools.txt
• 📝 .rhiza/rhiza.mk

Deleted (1)

• ❌ .rhiza/utils/version_matrix.py

Rhiza Scripts

Added (1)

• ✅ .rhiza/tests/shell/test_scripts.sh

Deleted (2)

• ❌ .rhiza/scripts/check_workflow_names.py
• ❌ .rhiza/scripts/release.sh

Tests

Added (8)

• ✅ tests/README.md
• ✅ tests/benchmarks/conftest.py
• ✅ tests/benchmarks/test_benchmarks.py
• ✅ tests/property/conftest.py
• ✅ tests/property/test_makefile_properties.py
• ✅ tests/stress/README.md
• ✅ tests/stress/conftest.py
• ✅ tests/stress/test_stress.py

Modified (9)

• 📝 tests/test_rhiza/conftest.py .rhiza/tests/conftest.py
• 📝 tests/test_rhiza/test_docstrings.py .rhiza/tests/sync/test_docstrings.py
• 📝 tests/test_rhiza/test_git_repo_fixture.py .rhiza/tests/utils/test_git_repo_fixture.py
• 📝 tests/test_rhiza/test_makefile.py .rhiza/tests/api/test_makefile_targets.py
• 📝 tests/test_rhiza/test_marimushka_target.py .rhiza/tests/integration/test_marimushka.py
• 📝 tests/test_rhiza/test_notebooks.py .rhiza/tests/integration/test_notebook_execution.py
• 📝 tests/test_rhiza/test_readme.py .rhiza/tests/sync/test_readme_validation.py
• 📝 tests/test_rhiza/test_requirements_folder.py .rhiza/tests/structure/test_requirements.py
• 📝 tests/test_rhiza/test_rhiza_workflows.py .rhiza/tests/sync/test_rhiza_version.py

Deleted (12)

• ❌ tests/test_rhiza/README.md
• ❌ tests/test_rhiza/benchmarks/.gitignore
• ❌ tests/test_rhiza/benchmarks/README.md
• ❌ tests/test_rhiza/benchmarks/analyze_benchmarks.py
• ❌ tests/test_rhiza/test_book.py
• ❌ tests/test_rhiza/test_check_workflow_names.py
• ❌ tests/test_rhiza/test_makefile_api.py
• ❌ tests/test_rhiza/test_makefile_gh.py
• ❌ tests/test_rhiza/test_release_script.py
• ❌ tests/test_rhiza/test_structure.py
• ❌ tests/test_rhiza/test_version_matrix.py
• ❌ tests/tests.mk

---

🤖 Generated by rhiza

• Template: jebel-quant/rhiza@main
• Last sync: 2026-01-26T08:06:25Z
• Sync date: 2026-02-23T00:42:17.905007+00:00