Y1000 file repo test
Current Data Release: V1.0
How to access data:
git clone https://github.com/HittingerLab/Y1000_Repo.git
cd Y1000_Repo
bash download_data.sh
bash prepare_data.sh
Description of files:
All downloaded data will be stored in Y1000_Repo/data/original
Soft links to the raw files will be in Y1000_Repo/data/BySpecies and Y1000_Repo/data/ByDataType
BySpecies: All files corresponding to the Species ID in one folder
ByDataType: All files of that DataType (genome,pep,cds,gff3, or gtf) in one folder
A table with file paths using the soft links in Y1000_Repo/data/ByDataType will be automatically genered as: File_paths.tsv
Description of Data Releases: V1.0 Exact copy of figshare data accompanying Opulente et al. 2024 Can be accessed directly at https://data.glbrc.org/shared_collections/341/shared?ak=8c2aa328e739ae78d0c08e8711b98a0e
The Data in the original figshare can be accessed below:
| Dataset | Figshare |
|---|---|
| Genomes | Genomes and annotations v2 |
| Annotations (gff3) | Genomes and annotations v2 |
| Protein AA sequences | Genomes and annotations v2 |
| Orthogroups | Figshare Genome analysis |
| Phenotypic data | Figshare Phenotyping Data for Saccharomycotina yeasts |
| Environmental data | NA |