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@IPNP-BIPN

IPNP-BIPN

🧬💻 BIPN: Bioinformatics for psychiatry & neuroscience—data analysis, omics, tools, and collaboration.

Bioinformatics In Psychiatry and Neuroscience

INSERM U1266 Institut de Psychiatrie et Neuroscience de Paris - BIPN is dedicate to conceptualize user needs in bioinformatics, to process data and to interpret the results from High-throughput projects in the specific fields of neuroscience and psychiatry. The platform is able to develop omics’ molecular analyses (genomics with Genome-wide Association study or Polygenic risk score, methylomics, trancriptomics, proteomics). Another mission of the platform is to maintain and transmit the adequate tools, coding and computer resources to manage data flows, storage and accessibility.

BIPN has expertise for Collection, Processing, Analysis and interpretation In different domains

Category Details
Data Management Data Warehousing, Data Architecture, Data Bases, Data Transformation, Languages
Languages Linux, Python, SQL, R
Computer Tools CellRanger, Plink, PRSice2, Minfi, Kallisto, Bismark, ENSEMBL-VEP
Transmission Generate scripts, Create tutorials, Design analysis, Teaching computer tools
Collaborations with IPNP Teams Team Krebs, Team Gorwood/Ramoz, Team Oppenheim, GHU Paris (Anatomopathology)
External Collaborations PEPR-PROPSY, CNRGH, Institut Imagine, Private companies (Diagenode, Integragen)
IPNP Facilities 1 NAS DS1819+ (48 To of storage), 1 Working station (1 To of RAM & 88 CPUs), research engineer : Benjamin Demaille

Popular repositories Loading

  1. .github .github Public

  2. NeuralDataSciPy2024 NeuralDataSciPy2024 Public

    Forked from ahmeddeladly/NeuralDataSciPy2024

    All information of the Neural Data Science with Python course of the Neuroscience Master program at Université Paris Cité.

    Jupyter Notebook

  3. CellBender CellBender Public

    Forked from broadinstitute/CellBender

    CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

    Python

  4. STREAM STREAM Public

    STREAM — Streamlined Transcript Expression & RNA-seq Mapping | Nextflow DSL2 RNA-seq QC + Quantification pipeline

    Nextflow

  5. SPLIT SPLIT Public

    Allele-specific RNA-seq pipeline: STAR + SNPsplit + featureCounts (Nextflow DSL2)

    Nextflow

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