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@Andrey170170 Andrey170170 commented Feb 16, 2025

Tool to get single-label data from the Lila BC

Things to do before it is ready for merge:

  • Test with data
  • Clean up classes
  • Write README.md

Updated package structure, filenames, and references to reflect the new name. Adjusted `pyproject.toml` to rename the project, update dependencies, and modify supported Python versions. These changes ensure consistency and alignment with the new project branding.
Updated all import statements to reference TreeOfLife_toolbox instead of DD_tools for consistency and clarity. Adjusted slurm scripts to align with the new module structure and standardized environment variables for toolbox path configuration.
Revised the project description, added programming language classifiers, and enhanced optional dependencies with 'ruff'. Introduced new keywords and added a script entry point for better usability.
Moved the LILA single-label filtering tool from `DD_tools` to `TreeOfLife_toolbox` and refactored components for improved organization and configurability. Added clear docstrings, a README file, and updated paths to align with the new structure.
@Andrey170170 Andrey170170 marked this pull request as ready for review May 14, 2025 07:13
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