Added research_filtering tool #14
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Updated package structure, filenames, and references to reflect the new name. Adjusted `pyproject.toml` to rename the project, update dependencies, and modify supported Python versions. These changes ensure consistency and alignment with the new project branding.
Updated all import statements to reference TreeOfLife_toolbox instead of DD_tools for consistency and clarity. Adjusted slurm scripts to align with the new module structure and standardized environment variables for toolbox path configuration.
Revised the project description, added programming language classifiers, and enhanced optional dependencies with 'ruff'. Introduced new keywords and added a script entry point for better usability.
Refactored `research_filtering` to use the `TreeOfLife_toolbox` namespace, replacing `DD_tools`. Enhanced documentation across classes, methods, and the README to improve clarity and maintainability. Adjusted configurations and paths to align with new processing workflows.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Tool to filter out data from the
Tree Of Lifedataset bybasisOfRecordThings to do before it is ready for merge:
README.md