feat: add vibecoded but working convert_json_jsonld.py

[caviri]

Note

Add JSON→JSON-LD conversion and a full agents-based enrichment pipeline with supporting data models, API/analysis modules, utilities, tooling, and docs.

• Core conversion and CLI:
  • Add scripts/convert_json_jsonld.py and docs for JSON→JSON-LD conversion, plus Tentris upload scripts (scripts/upload_all_to_tentris.sh, scripts/test_tentris_upload.sh).
• Agents and enrichment:
  • Introduce enrichment agents for academic catalog, organizations, users, and linked entities (src/agents/**), including structured outputs, classifiers, context compilers, prompts, and validation.
  • Add EPFL-specific assessment/checkers and URL validation utilities for agent workflows.
• Data models:
  • Implement Pydantic models and JSON-LD mapping across entities (src/data_models/**) with conversion utilities.
• API and analysis:
  • Add src/api.py and analysis modules for users, orgs, repositories (src/analysis/**).
  • Add context providers for sources (src/context/**).
• LLM and config:
  • Provide src/llm/model_config.py and agent management setup.
• Utilities:
  • Add enhanced logging, token counting, URL utils, and general helpers (src/utils/**).
• Tooling and docs:
  • Add devcontainer config, justfile, pyproject.toml, and extensive docs under docs/ and .cursor/rules/.
• Tests:
  • Add caching test tests/test_cache.py.

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[cursor]

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[caviri]

Hi @rmfranken, I can see the conversion for repositories what about the conversion for user, and organization?

[rmfranken]

Here are the conversion commands for each type - they are pretty much the same:
A person:
python scripts/convert_json_jsonld.py to-jsonld MalloryWittwer.json output.jsonld --base-url https://github.com/MalloryWittwer

A organization:
python scripts/convert_json_jsonld.py to-jsonld sdsc-ordes.json sdsc-ordes.jsonld --base-url https://github.com/sdsc-ordes
A software:
python scripts/convert_json_jsonld.py to-jsonld DeepLabCutDeepLabCut.json DeepLabCutDeepLabCut.jsonld --base-url https://github.com/DeepLabCut/DeepLabCut

The script auto-detects what kind of entity it's dealing with and processes it accordingly. The base-url is a bit too safe maybe - but we can see how easy it is to inject that into the call that we build.

[rmfranken]

I think I want to make the URI's hashed - not blank nodes. Tentris is not dealing super well with them - not sure why - will investigate tomorrow.

[cursor]

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[cursor]

Bug: Data Identity Crisis: Authors Become Organizations

The organization-level enrichment loop iterates over self.data.author instead of the correct organizations field. This causes the code to process authors as if they were organizations, attempting to access org.legalName on Person objects which don't have that attribute. The loop should iterate over self.data.relatedToOrganizations instead.

 

[cursor]

Bug: Enrichment Loop Confuses Authors and Organizations

The organization-level enrichment loop iterates over self.data.author instead of the correct organizations field. This causes the code to process authors as if they were organizations, attempting to access org.legalName on Person objects which don't have that attribute. The loop should iterate over self.data.relatedToOrganizations instead.