omics-website

tbd...

Docker Initialisation

1. Install Docker from here
2. Start Docker or Docker Desktop
3. Open a command line interface (cmd or terminal)
4. Navigate to path/to/omics-website main folder (cd path/to/dir)
5. Call docker compose up -d
6. Access the website via localhost:8080

CSV Schema

gen_Genename	acc_Accession	misc_Additional Information	...	grp_grpname_samplename	...
MAPK3	P27361	...	...	8.290...	...
...	...	...	...	...	...

All column names are adaptable except the tags before the first ''. Additional '' may lead to problems.

Extract Results

The results of the analysis can be accessed on the hosting pc by naviagting to path/to/omics-website/Webserver/flask-backend/Snakemake/data.
For each analysis a new folder will be generated.
As of the current status, starting a new analysis on an already processed dataset will overwrite the old results unless the are renamed!

Upcoming Changes

1. Reducing backend container size
2. Improving performance on ARM64-Macs (M1-models) <- Depends on Bioconductor releases
3. Finishing report.html generation
4. More options for id-mapping
5. Fixing colouring options for some analyses

Contact

Devon Siemes: devon.siemes@uni-due.de