Summarize command#64

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berndbohmeier wants to merge 75 commits intomainfrom

feature/summary

Commits on Sep 16, 2025

Commits on Oct 11, 2025

Merge remote-tracking branch 'origin/main' into feature/summary
berndbohmeier
committed

Commits on Oct 13, 2025

Commits on Oct 14, 2025

Commits on Oct 21, 2025

Commits on Oct 22, 2025

Linter fixes and code structure
berndbohmeier
committed

Commits on Oct 28, 2025

Commits on Oct 30, 2025

Add gene deletion detection
berndbohmeier
committed

Commits on Nov 5, 2025

Add show neg control coverage in summary
berndbohmeier
committed

Commits on Dec 4, 2025

Commits on Dec 7, 2025

Expose false-positive filter and consolidate prev calc
JasonAHendry
committed

Commits on Dec 8, 2025

Commits on Jan 6, 2026

More detailed output of what summary is loaded
berndbohmeier
committed

Commits on Feb 9, 2026