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Merged
EzicStar merged 2 commits into from
May 28, 2025
Merged

Docs/add h5 warning #77

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0169391
add extension note
EzicStar May 28, 2025
858b1c9
forgot to add it in other fields
EzicStar May 28, 2025
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6 changes: 3 additions & 3 deletions src/stamp/config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@ crossval:
# containing the feature file path relative to `feature_dir`.
# Patient IDs not present in the clini table
# as well as non-existent feature paths
# are ignored.
# are ignored. NOTE: Don't forget to add the .h5 file extension.
slide_table: "/path/of/slide.csv"

# Name of the column from the clini table to train on.
Expand Down Expand Up @@ -114,7 +114,7 @@ training:
# containing the feature file path relative to `feature_dir`.
# Patient IDs not present in the clini table
# as well as non-existent feature paths
# are ignored.
# are ignored. NOTE: Don't forget to add the .h5 file extension.
slide_table: "/path/of/slide.csv"

# Name of the column from the clini table to train on.
Expand Down Expand Up @@ -155,7 +155,7 @@ deployment:
# containing the patient ID (matching those in the `clini_table`), and one
# called "FILENAME", containing the feature file path relative to `feature_dir`.
# Patient IDs not present in the clini table as well as non-existent feature
# paths are ignored.
# paths are ignored. NOTE: Don't forget to add the .h5 file extension.
slide_table: "/path/of/slide.csv"

# Name of the column from the clini to compare predictions to.
Expand Down