Muscle_wasting is a repository containing a script for mining papers from PubMed based on a search query and evaluating the results. The project involves network analysis using Cytoscape networks and various libraries.
The Muscle_wasting repository contains a script for mining papers from PubMed based on a search query and evaluating the results. The project also involves network analysis using Cytoscape networks and various libraries.
To install and setup the project, you may need to install the required packages listed in the requirements.txt file using pip. Additionally, the project requires the following libraries:
- pandas
- pytest
- cytoscape
- network_processing
- py4cytoscape You can install these libraries using pip:
pip install -r requirements.txt
pip install pandas pytest cytoscape network_processing py4cytoscapeTo use the paper_miner script, run it from the command line with the following arguments:
python paper_miner.py -s <search> -n <min> -x <max> -o <output> -p <print_diagram>The search query is required, and the output file name will default to "paper_miner_output.csv" if not provided.
This project is under no license.
For any questions or feedback please reach out to:
- Email: GuerreroVazquez@gmail.com
- GitHub Profile: GuerreroVazquez
- LinkedIn: GuerreroVazquez Feel free to open an issue on GitHub or contact me in any way if you have any queries or suggestions.