Trackhub for Dog Long-Read SV Analysis
This trackhub contains structural variants identified relative to the Mischka (canFam4) genome assembly.
The following tracks are included:
SV_12 SVs found though analysis of 12 assemblies using long-read, short-read, and assembly comparisons
Dog10K Merged set of SVs genotyped in Dog10K samples based on Manta+Paragraph
Ohana SVs above the significant threshold for Ohana analysis
For all tracks the following colors are used:
| SV Type | Color |
|---|---|
| Deletion | Red |
| Insertion | Blue |
| Inversion | Green |
| Duplication | Orange |
| Translocation | Purple |
See Schall et al. for more information.
Load the trackhub in the UCSC browser with this link:
https://raw.githubusercontent.com/KiddLab/dog-long-read-sv/main/dog-tracks.hub.txt
Contact Kidd Lab, University of Michigan for more information
Go to http://genome.ucsc.edu/
Click on My Data --> Track Hubs
click the 'Connected Hubs' tab
paste in this address: https://raw.githubusercontent.com/KiddLab/dog-long-read-sv/main/dog-tracks.hub.txt
Click 'Add Hub'