Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
36 changes: 18 additions & 18 deletions requirements.txt
Original file line number Diff line number Diff line change
@@ -1,21 +1,21 @@
click==8.1.3
graphtools==1.5.3
hydra-core==1.3.2
hyperlib==0.0.6
mpmath==1.2.1
networkx==2.8.6
numpy==1.22.0
omegaconf==2.3.0
click>=8.1.3
graphtools>=1.5.3
hydra-core>=1.3.2
hyperlib>=0.0.6
mpmath>=1.2.1
networkx>=2.8.6
numpy>=1.22.0
omegaconf>=2.3.0
pandas
phate==1.0.10
PyGSP==0.5.1
python-dotenv==1.0.0
s_gd2==1.8.1
scanpy==1.9.3
scikit_learn==1.2.2
scikit_sparse==0.4.8
scipy==1.9.1
scprep==1.2.1
setuptools==65.3.0
phate>=1.0.10
PyGSP>=0.5.1
python-dotenv>=1.0.0
s_gd2>=1.8.1
scanpy>=1.9.3
scikit_learn>=1.2.2
scikit_sparse>=0.4.8
scipy>=1.9.1
scprep>=1.2.1
setuptools>=65.3.0
POT
kneed
4 changes: 2 additions & 2 deletions settings.ini
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ user = KrishnaswamyLab

### Optional ###
# console_scripts =
requirements = graphtools==1.5.3 networkx==2.8.6 numpy==1.23.5 PyGSP==0.5.1 s_gd2==1.8.1 scikit-learn==1.2.2 setuptools scipy kneed
dev_requirements = hydra-core==1.3.2 omegaconf==2.3.0 python-dotenv==1.0.0 phate==1.0.10 scanpy==1.9.3 scprep==1.2.1 POT umap
requirements = graphtools>=1.5.3 networkx>=2.8.6 numpy>=1.23.5 PyGSP>=0.5.1 s_gd2>=1.8.1 scikit-learn>=1.2.2 setuptools scipy kneed
dev_requirements = hydra-core>=1.3.2 omegaconf>=2.3.0 python-dotenv>=1.0.0 phate>=1.0.10 scanpy>=1.9.3 scprep>=1.2.1 POT umap

# problem with scikit_sparse==0.4.8
Loading