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2 changes: 1 addition & 1 deletion elisa/src/org/labkey/elisa/view/runDetailsView.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@
}
%>
<%
JspView<ElisaController.RunDetailsForm> me = (JspView<ElisaController.RunDetailsForm>) HttpView.currentView();
JspView<ElisaController.RunDetailsForm> me = HttpView.currentView();
ElisaController.RunDetailsForm form = me.getModelBean();
String appId = "run-details-" + getRequestScopedUID();
%>
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2 changes: 1 addition & 1 deletion elispotassay/src/org/labkey/elispot/view/plateSummary.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@
}
%>
<%
JspView<ElispotController.PlateSummaryBean> me = (JspView<ElispotController.PlateSummaryBean>)HttpView.currentView();
JspView<ElispotController.PlateSummaryBean> me = HttpView.currentView();
ElispotController.PlateSummaryBean bean = me.getModelBean();

String renderId = "plate-summary-div-" + 1; // getRequestScopedUID(); // TODO ElispotAssayTest test expects 1
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Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
JspView<ChooseRunsToAnalyzeForm> me = (JspView<ChooseRunsToAnalyzeForm>) HttpView.currentView();
JspView<ChooseRunsToAnalyzeForm> me = HttpView.currentView();
ChooseRunsToAnalyzeForm form = me.getModelBean();
Container c = getContainer();
%>
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Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@
}
%>
<%
JspView<ChooseRunsToAnalyzeForm> me = (JspView<ChooseRunsToAnalyzeForm>) HttpView.currentView();
JspView<ChooseRunsToAnalyzeForm> me = HttpView.currentView();
ChooseRunsToAnalyzeForm form = me.getModelBean();
ChooseRunsView view = new ChooseRunsView(form);
Collection<FlowExperiment> targetExperiments = new ArrayList(form.getAvailableAnalyses());
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Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@
<%@ page import="java.util.Set" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
JspView<ImportRunsForm> me = (JspView<ImportRunsForm>) HttpView.currentView();
JspView<ImportRunsForm> me = HttpView.currentView();
ImportRunsForm form = me.getModelBean();
Container c = getContainer();

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2 changes: 1 addition & 1 deletion flow/src/org/labkey/flow/controllers/well/chooseGraph.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%
HttpView<ChooseGraphForm> me = (HttpView<ChooseGraphForm>) HttpView.currentView();
HttpView<ChooseGraphForm> me = HttpView.currentView();
ChooseGraphForm form = me.getModelBean();

boolean hasScripts = false;
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2 changes: 1 addition & 1 deletion flow/src/org/labkey/flow/view/exportAnalysis.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%
JspView<ExportAnalysisForm> me = (JspView<ExportAnalysisForm>) HttpView.currentView();
JspView<ExportAnalysisForm> me = HttpView.currentView();
ExportAnalysisForm bean = me.getModelBean();

Map<AnalysisSerializer.Options, String> exportFormats = new EnumMap<>(AnalysisSerializer.Options.class);
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2 changes: 1 addition & 1 deletion luminex/src/org/labkey/luminex/view/defaultValues.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%
JspView<DefaultValuesForm> me = (JspView<DefaultValuesForm>) HttpView.currentView();
JspView<DefaultValuesForm> me = HttpView.currentView();
DefaultValuesForm bean = me.getModelBean();
List<String> analytes = bean.getAnalytes();
List<String> positivityThresholds = bean.getPositivityThresholds();
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2 changes: 1 addition & 1 deletion luminex/src/org/labkey/luminex/view/exclusionWarning.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%
JspView<LuminexRunUploadForm> me = (JspView<LuminexRunUploadForm>) HttpView.currentView();
JspView<LuminexRunUploadForm> me = HttpView.currentView();
LuminexRunUploadForm bean = me.getModelBean();
long exclusionCount = bean.getExclusionCount();
long lostExclusions = bean.getLostExclusions();
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Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@
}
%>
<%
JspView<LuminexController.GuideSetsDeleteBean> me = (JspView<LuminexController.GuideSetsDeleteBean>) HttpView.currentView();
JspView<LuminexController.GuideSetsDeleteBean> me = HttpView.currentView();
LuminexController.GuideSetsDeleteBean bean = me.getModelBean();
List<GuideSet> guideSets = bean.getGuideSets();

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10 changes: 2 additions & 8 deletions luminex/src/org/labkey/luminex/view/leveyJenningsMenu.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -14,22 +14,16 @@
* See the License for the specific language governing permissions and
* limitations under the License.
*/

/**
* User: jeckels
* Date: August 27, 2013
*/

%>
<%@ page import="org.labkey.api.view.ActionURL" %>
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.luminex.LeveyJenningsForm" %>
<%@ page import="org.labkey.luminex.LeveyJenningsMenuView" %>
<%@ page import="org.labkey.luminex.LuminexController" %>
<%@ page import="org.labkey.api.view.ActionURL" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>

<%
LeveyJenningsMenuView me = (LeveyJenningsMenuView) HttpView.currentView();
LeveyJenningsMenuView me = HttpView.currentView();
LeveyJenningsMenuView.Bean bean = me.getModelBean();
%>

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8 changes: 1 addition & 7 deletions luminex/src/org/labkey/luminex/view/leveyJenningsReport.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -14,12 +14,6 @@
* See the License for the specific language governing permissions and
* limitations under the License.
*/

/**
* User: cnathe
* Date: Sept 19, 2011
*/

%>
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.api.view.JspView" %>
Expand All @@ -36,7 +30,7 @@
}
%>
<%
JspView<LeveyJenningsForm> me = (JspView<LeveyJenningsForm>) HttpView.currentView();
JspView<LeveyJenningsForm> me = HttpView.currentView();
LeveyJenningsForm bean = me.getModelBean();
%>

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2 changes: 1 addition & 1 deletion luminex/src/org/labkey/luminex/view/titrationWellRoles.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@
</style>

<%
JspView<LuminexRunUploadForm> me = (JspView<LuminexRunUploadForm>) HttpView.currentView();
JspView<LuminexRunUploadForm> me = HttpView.currentView();
LuminexRunUploadForm bean = me.getModelBean();
Map<String, Titration> titrationsWithTypes = bean.getParser().getTitrationsWithTypes();

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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,6 @@
<%@ page import="org.labkey.api.data.Container" %>
<%@ page import="org.labkey.api.data.ContainerManager" %>
<%@ page import="org.labkey.api.security.permissions.InsertPermission" %>
<%@ page import="org.labkey.api.util.PageFlowUtil" %>
<%@ page import="org.labkey.api.view.ActionURL" %>
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.api.view.JspView" %>
Expand All @@ -27,7 +26,6 @@
<%@ page import="org.springframework.validation.Errors" %>
<%@ page import="org.springframework.validation.ObjectError" %>
<%@ page import="java.util.LinkedHashMap" %>
<%@ page import="java.util.List" %>
<%@ page import="java.util.Map" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%!
Expand All @@ -38,7 +36,7 @@
}
%>
<%
JspView<FeatureAnnotationSetController.FeatureAnnotationSetForm> me = (JspView<FeatureAnnotationSetController.FeatureAnnotationSetForm>) HttpView.currentView();
JspView<FeatureAnnotationSetController.FeatureAnnotationSetForm> me = HttpView.currentView();
String vendor = me.getModelBean().getVendor();
String name = me.getModelBean().getName();
String description = me.getModelBean().getDescription();
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/blastAdmin.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
HttpView<String> me = (HttpView<String>) HttpView.currentView();
HttpView<String> me = HttpView.currentView();
String url = me.getModelBean();
%>
<labkey:form method="POST">
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Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@
<%@ page extends="org.labkey.api.jsp.JspBase"%>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%
JspView<MS2Controller.CompareOptionsBean> view = (JspView<MS2Controller.CompareOptionsBean>) HttpView.currentView();
JspView<MS2Controller.CompareOptionsBean> view = HttpView.currentView();
MS2Controller.CompareOptionsBean bean = view.getModelBean();
MS2Controller.PeptideFilteringComparisonForm form = bean.getForm();
String peptideViewName = form.getPeptideCustomViewName(getViewContext());
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4 changes: 2 additions & 2 deletions ms2/src/org/labkey/ms2/compare/spectraCountOptions.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,6 @@
* limitations under the License.
*/
%>
<%@ page import="org.labkey.ms2.MS2Controller.PeptideFilteringFormElements" %>
<%@ page import="org.labkey.api.protein.search.ProphetFilterType" %>
<%@ page import="org.labkey.api.util.HtmlString" %>
<%@ page import="org.labkey.api.util.PageFlowUtil" %>
Expand All @@ -24,6 +23,7 @@
<%@ page import="org.labkey.api.view.JspView" %>
<%@ page import="org.labkey.api.view.template.ClientDependencies" %>
<%@ page import="org.labkey.ms2.MS2Controller" %>
<%@ page import="org.labkey.ms2.MS2Controller.PeptideFilteringFormElements" %>
<%@ page import="static org.labkey.ms2.MS2Controller.PeptideFilteringFormElements.peptideFilterType" %>
<%@ page import="static org.labkey.api.protein.search.ProphetFilterType.probability" %>
<%@ page import="static org.labkey.api.protein.search.ProphetFilterType.customView" %>
Expand All @@ -41,7 +41,7 @@
}
%>
<%
JspView<MS2Controller.CompareOptionsBean> view = (JspView<MS2Controller.CompareOptionsBean>) HttpView.currentView();
JspView<MS2Controller.CompareOptionsBean> view = HttpView.currentView();
MS2Controller.CompareOptionsBean<MS2Controller.SpectraCountForm> bean = view.getModelBean();
MS2Controller.SpectraCountForm form = bean.getForm();
String peptideViewName = form.getPeptideCustomViewName(getViewContext());
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/decoySummary.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@
<%@ page import="java.util.Map" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
JspView<MS2Manager.DecoySummaryBean> me = ((JspView<MS2Manager.DecoySummaryBean>)HttpView.currentView());
JspView<MS2Manager.DecoySummaryBean> me = HttpView.currentView();
MS2Manager.DecoySummaryBean bean = me.getModelBean();

NumberFormat defaultFormat = NumberFormat.getPercentInstance();
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/editElution.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@
<%@ page import="java.text.DecimalFormat"%>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
JspView<EditElutionGraphContext> me = (JspView<EditElutionGraphContext>) HttpView.currentView();
JspView<EditElutionGraphContext> me = HttpView.currentView();
EditElutionGraphContext ctx = me.getModelBean();
MS2Peptide p = ctx.getPeptide();
PeptideQuantitation quant = ctx.getQuantitation();
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5 changes: 3 additions & 2 deletions ms2/src/org/labkey/ms2/filterHeader.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -20,13 +20,14 @@
<%@ page import="org.labkey.api.util.HtmlString" %>
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.api.view.JspView" %>
<%@ page import="org.labkey.ms2.MS2Controller" %>
<%@ page import="org.labkey.ms2.MS2Controller.FilterHeaderBean" %>
<%@ page import="org.labkey.ms2.peptideview.MS2RunViewType" %>
<%@ page import="static org.labkey.api.util.DOM.Attribute.style" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
MS2Controller.FilterHeaderBean bean = ((JspView<MS2Controller.FilterHeaderBean>)HttpView.currentView()).getModelBean();
JspView<FilterHeaderBean> view = HttpView.currentView();
FilterHeaderBean bean = view.getModelBean();
User user = getUser();
String runChargeFilterColumnName = bean.run.getChargeFilterColumnName();
String grouping = getViewContext().cloneActionURL().getParameter("grouping");
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/manageViews.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
HttpView<MS2Controller.ManageViewsBean> me = (HttpView<MS2Controller.ManageViewsBean>) HttpView.currentView();
HttpView<MS2Controller.ManageViewsBean> me = HttpView.currentView();
MS2Controller.ManageViewsBean bean = me.getModelBean();
%>
<labkey:form method="post" name="manageViewsForm" action="">
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4 changes: 3 additions & 1 deletion ms2/src/org/labkey/ms2/ms2Admin.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -20,10 +20,12 @@
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.api.view.JspView" %>
<%@ page import="org.labkey.ms2.MS2Controller" %>
<%@ page import="org.labkey.ms2.MS2Controller.MS2AdminBean" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
MS2Controller.MS2AdminBean bean = ((JspView<MS2Controller.MS2AdminBean>)HttpView.currentView()).getModelBean();
JspView<MS2AdminBean> view = HttpView.currentView();
MS2AdminBean bean = view.getModelBean();
%>
<table class="labkey-data-region-legacy labkey-show-borders" cellpadding="4" cellspacing="4">
<tr>
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4 changes: 3 additions & 1 deletion ms2/src/org/labkey/ms2/pickView.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -19,10 +19,12 @@
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.api.view.JspView" %>
<%@ page import="org.labkey.ms2.MS2Controller" %>
<%@ page import="org.labkey.ms2.MS2Controller.PickViewBean" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
MS2Controller.PickViewBean bean = ((JspView<MS2Controller.PickViewBean>)HttpView.currentView()).getModelBean();
JspView<PickViewBean> view = HttpView.currentView();
PickViewBean bean = view.getModelBean();
%>
<p><%=h(bean.viewInstructions)%></p>
<p>
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/pipeline/ConfigureSequenceDB.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%
HttpView<String> me = (HttpView<String>) HttpView.currentView();
HttpView<String> me = HttpView.currentView();
String localPathRoot = me.getModelBean();
%>
<labkey:form method="POST" name="updateClusterSequenceDB" action="<%=urlFor(PipelineController.SetupClusterSequenceDBAction.class)%>">
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/pipeline/comet/setCometDefaults.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
}
%>
<%
JspView<PipelineController.SetDefaultsForm> view = (JspView<PipelineController.SetDefaultsForm>) HttpView.currentView();
JspView<PipelineController.SetDefaultsForm> view = HttpView.currentView();
PipelineController.SetDefaultsForm form = view.getModelBean();
Container c = getContainer();
%>
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
}
%>
<%
JspView<PipelineController.SetDefaultsForm> view = (JspView<PipelineController.SetDefaultsForm>) HttpView.currentView();
JspView<PipelineController.SetDefaultsForm> view = HttpView.currentView();
PipelineController.SetDefaultsForm form = view.getModelBean();
Container c = getContainer();
%>
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
}
%>
<%
JspView<PipelineController.SetDefaultsForm> view = (JspView<PipelineController.SetDefaultsForm>) HttpView.currentView();
JspView<PipelineController.SetDefaultsForm> view = HttpView.currentView();
PipelineController.SetDefaultsForm form = view.getModelBean();
Container c = getContainer();
%>
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
}
%>
<%
JspView<PipelineController.SetDefaultsForm> view = (JspView<PipelineController.SetDefaultsForm>)HttpView.currentView();
JspView<PipelineController.SetDefaultsForm> view = HttpView.currentView();
PipelineController.SetDefaultsForm form = view.getModelBean();
Container c = getContainer();
%>
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5 changes: 3 additions & 2 deletions ms2/src/org/labkey/ms2/protein.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -16,18 +16,19 @@
*/
%>
<%@ page import="org.labkey.api.util.Formats" %>
<%@ page import="org.labkey.api.util.HtmlString" %>
<%@ page import="org.labkey.api.util.Pair" %>
<%@ page import="org.labkey.api.view.ActionURL" %>
<%@ page import="org.labkey.api.view.HttpView" %>
<%@ page import="org.labkey.api.view.JspView" %>
<%@ page import="org.labkey.ms2.PeptideManager" %>
<%@ page import="org.labkey.ms2.protein.ProteinViewBean" %>
<%@ page import="java.text.Format" %>
<%@ page import="org.labkey.api.util.HtmlString" %>
<%@ taglib prefix="labkey" uri="http://www.labkey.org/taglib" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
ProteinViewBean bean = ((JspView<ProteinViewBean>)HttpView.currentView()).getModelBean();
JspView<ProteinViewBean> view = HttpView.currentView();
ProteinViewBean bean = view.getModelBean();
Format intFormat = Formats.commaf0;
Format percentFormat = Formats.percent;
%>
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3 changes: 2 additions & 1 deletion ms2/src/org/labkey/ms2/proteinCoverageMapHeader.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,8 @@
<%@ page import="org.labkey.ms2.protein.ProteinViewBean" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
ProteinViewBean bean = ((JspView<ProteinViewBean>)HttpView.currentView()).getModelBean();
JspView<ProteinViewBean> view = HttpView.currentView();
ProteinViewBean bean = view.getModelBean();

if (bean.showPeptides)
{
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/proteinDisambiguation.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -74,7 +74,7 @@
%>

<%
JspView<Pair<ActionURL, List<Protein>>> view = (JspView<Pair<ActionURL, List<Protein>>>) HttpView.currentView();
JspView<Pair<ActionURL, List<Protein>>> view = HttpView.currentView();
Pair<ActionURL, List<Protein>> actionWithProteins = view.getModelBean();
List<Protein> proteins = actionWithProteins.second;
ActionURL baseUrl = actionWithProteins.first;
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/runSummary.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@
<%@ page import="java.util.List" %>
<%@ page extends="org.labkey.api.jsp.JspBase" %>
<%
JspView<MS2Controller.RunSummaryBean> me = ((JspView<MS2Controller.RunSummaryBean>)HttpView.currentView());
JspView<MS2Controller.RunSummaryBean> me = HttpView.currentView();
Container c = getContainer();
MS2Controller.RunSummaryBean bean = me.getModelBean();
MS2Run run = bean.run;
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2 changes: 1 addition & 1 deletion ms2/src/org/labkey/ms2/search/peptidePanel.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@
<%
// This panel is optionally rendered by proteinPanel.jsp for MS2 deployments only. It requires "MS2/inlineViewDesigner.js",
// which is optionally included by searchProteins.jsp.
JspView<ProteinSearchBean> me = (JspView<ProteinSearchBean>) HttpView.currentView();
JspView<ProteinSearchBean> me = HttpView.currentView();
ProteinSearchBean bean = me.getModelBean();
ViewContext ctx = getViewContext();
FilterView peptideView = new FilterView(ctx, true);
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