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IPC Project #1299

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ec6f457
Added IPC project files.
kollil Feb 15, 2022
5f26b76
Fixed the sql error
kollil Feb 15, 2022
eca2fa6
Removed the commented out lines from the code.
kollil Feb 15, 2022
c30bc76
Added the IPC service
kollil Feb 16, 2022
3ea9068
Added the reference data table and xml schema.
kollil Feb 17, 2022
734d7c9
Updated IPC code
kollil Mar 23, 2022
d0c5f4f
Added th IPC copy section feature
kollil Apr 6, 2022
a8b2cf6
Merge remote-tracking branch 'origin/22.7_fb_IPC' into 23.3_fb_IPCPro…
kollil Oct 20, 2023
fa4ff95
IPC project load.
kollil Oct 23, 2023
a422097
Delete onprc_ehr/resources/queries/study/Notes_WithLocation.query.xml
kollil Oct 23, 2023
c762662
Delete onprc_ehr/src/org/labkey/onprc_ehr/notification/TreatmentAlert…
kollil Oct 23, 2023
21087bd
Delete onprc_ehr/resources/queries/study/demographicsAssignedVet.quer…
kollil Oct 23, 2023
947cbd6
Delete onprc_ehr/resources/queries/study/treatmentScheduleMPA.query.xml
kollil Oct 23, 2023
0da347d
Delete onprc_ehr/resources/queries/study/treatmentScheduleMPA.sql
kollil Oct 23, 2023
9943ea6
Delete onprc_ehr/src/org/labkey/onprc_ehr/dataentry/MedSignoffFormTyp…
kollil Oct 23, 2023
34ca246
Delete onprc_ehr/resources/queries/study/Notes_WithLocation.sql
kollil Oct 23, 2023
e54689c
Delete onprc_ehr/resources/queries/study/TreatmentSchedulePostOps.sql
kollil Oct 23, 2023
78ca599
Delete onprc_ehr/resources/queries/study/demographicsAssignedVet.sql
kollil Oct 23, 2023
a5053d3
Delete onprc_ehr/resources/queries/study/vetAssignment_demographics.sql
kollil Oct 23, 2023
ea436f2
Delete onprc_ehr/resources/queries/study/vetAssignment_projects.sql
kollil Oct 23, 2023
3755e12
Delete onprc_ehr/resources/queries/study/vetassignment_filter.sql
kollil Oct 23, 2023
8e9d133
Delete onprc_ehr/resources/web/onprc_ehr/data/sources/TreatmentOrders…
kollil Oct 23, 2023
f5b6e22
Delete onprc_ehr/src/org/labkey/onprc_ehr/notification/BehaviorNotifi…
kollil Oct 23, 2023
e40e8ff
updated a file
kollil Oct 24, 2023
9eb05c2
Merge remote-tracking branch 'origin/23.3_fb_IPCProject' into 23.3_fb…
kollil Oct 24, 2023
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2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_CassetteColors.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCCassetteColor' and dateDisabled is null
87 changes: 87 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_CassettePrinting.query.xml
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<!--IPC schema. Added by Kolli, 04/2020 -->
<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="IPC_CassettePrinting" tableDbType="TABLE" useColumnOrder="true">
<tableUrl />
<tableTitle>IPC Cassette Printing</tableTitle>
<columns>
<column columnName="rowId">
<isHidden>true</isHidden>
</column>

<column columnName="Id">
<columnTitle>Id</columnTitle>
</column>

<column columnName="Date">
<columnTitle>Date</columnTitle>
</column>

<column columnName="tissueType">
<columnTitle>Tissue Types</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_TissueTypes</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="PILabel">
<columnTitle>PI Label Text</columnTitle>
</column>

<column columnName="cassetteColor">
<columnTitle>Cassette Color</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_CassetteColors</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="remark">
<columnTitle>Remarks</columnTitle>
</column>

<column columnName="qcstate">
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>qcstate</fkTable>
<fkColumnName>RowId</fkColumnName>
</fk>
</column>

<column columnName="taskid">
<columnTitle>Task Id</columnTitle>
<fk>
<fkDbSchema>ehr</fkDbSchema>
<fkTable>tasks</fkTable>
<fkColumnName>taskid</fkColumnName>
</fk>
</column>
<column columnName="objectid">
<isHidden>true</isHidden>
</column>
<column columnName="performedBy">
<columnTitle>Performed By</columnTitle>
</column>
<column columnName="created">
<isHidden>true</isHidden>
</column>
<column columnName="createdby"/>

<column columnName="modified">
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby"/>

<column columnName="container">
<isHidden>true</isHidden>
</column>

</columns>
</table>
</tables>
</metadata>
</query>
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_CurrentFixative.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCCurrentFixative' and dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Embedding.sql
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-- Get Embedding values
SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCEmbedding' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_FixationMethod.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCFixationMethod' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_FrozenSectionThickness.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCFrozenSectionThickness' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_FrozenSectioning.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCFrozenSectioning' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_HandE.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCHAndE' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_IHC.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCIHC' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_IHCAntibody.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCIHCAntibody' and dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Investigators.sql
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SELECT lastName + ', ' + firstName as name
From Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.investigators
Where dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Locations.sql
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SELECT room
From Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.ehr_lookups.rooms
Where dateDisabled is null order by room
80 changes: 80 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Other.query.xml
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<!--IPC schema. Added by Kolli, 04/2020 -->
<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="IPC_Other" tableDbType="TABLE" useColumnOrder="true">
<tableUrl />
<tableTitle>IPC Other</tableTitle>
<columns>
<column columnName="rowId">
<isHidden>true</isHidden>
</column>

<column columnName="Id">
<columnTitle>Id</columnTitle>
</column>

<column columnName="Date">
<columnTitle>Date</columnTitle>
</column>

<column columnName="tissueType">
<columnTitle>Tissue Types</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_TissueTypes</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="serviceAndProducts">
<columnTitle>Services And Products</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_OtherServices</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="performedBy">
<columnTitle>Performed By</columnTitle>
</column>

<column columnName="qcstate">
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>qcstate</fkTable>
<fkColumnName>RowId</fkColumnName>
</fk>
</column>

<column columnName="taskid">
<columnTitle>Task Id</columnTitle>
<fk>
<fkDbSchema>ehr</fkDbSchema>
<fkTable>tasks</fkTable>
<fkColumnName>taskid</fkColumnName>
</fk>
</column>
<column columnName="objectid">
<isHidden>true</isHidden>
</column>
<column columnName="created">
<isHidden>true</isHidden>
</column>
<column columnName="createdby"/>

<column columnName="modified">
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby"/>

<column columnName="container">
<isHidden>true</isHidden>
</column>

</columns>
</table>
</tables>
</metadata>
</query>
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_OtherServices.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCOtherServices' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_ParaffinSectioning.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCParaffinSectioning' and dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Pathologist.sql
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SELECT displayname as name
From Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.Reference_StaffNames
Where Type like 'Necropsy' and DisableDate is null
115 changes: 115 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_ProcessingEmbedding.query.xml
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<!--IPC schema. Added by Kolli, 04/2020 -->
<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="IPC_ProcessingEmbedding" tableDbType="TABLE" useColumnOrder="true">
<tableUrl />
<tableTitle>IPC Processing Embedding</tableTitle>
<columns>
<column columnName="rowId">
<isHidden>true</isHidden>
</column>

<column columnName="Id">
<columnTitle>Id</columnTitle>
</column>

<column columnName="Date">
<columnTitle>Date</columnTitle>
</column>

<column columnName="tissueType">
<columnTitle>Tissue Types</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_TissueTypes</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="embedding">
<columnTitle>Embedding</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_Embedding</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="fixationMethod">
<columnTitle>Initial Fixative</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_FixationMethod</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="fixationDuration">
<columnTitle>Fixation Duration</columnTitle>
</column>

<column columnName="currentFixative">
<columnTitle>Current Fixative</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_CurrentFixative</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="processingType">
<columnTitle>Processing Type</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_ProcessingType</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="embeddingIns">
<columnTitle>Embedding Instructions</columnTitle>
</column>

<column columnName="performedBy">
<columnTitle>Performed By</columnTitle>
</column>

<column columnName="qcstate">
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>qcstate</fkTable>
<fkColumnName>RowId</fkColumnName>
</fk>
</column>

<column columnName="taskid">
<columnTitle>Task Id</columnTitle>
<fk>
<fkDbSchema>ehr</fkDbSchema>
<fkTable>tasks</fkTable>
<fkColumnName>taskid</fkColumnName>
</fk>
</column>
<column columnName="objectid">
<isHidden>true</isHidden>
</column>
<column columnName="created">
<isHidden>true</isHidden>
</column>
<column columnName="createdby"/>

<column columnName="modified">
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby"/>

<column columnName="container">
<isHidden>true</isHidden>
</column>

</columns>
</table>
</tables>
</metadata>
</query>
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_ProcessingType.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCProcessingType' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_RNAScope.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCRNAScope' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_SectionThickness.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCSectionThickness' and dateDisabled is null
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