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Manipulate genome sequence

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Laura Saba edited this page Mar 13, 2014 · 1 revision
  1. manipulateGenomeSequence.txt is a program to eliminate chromosomes from a FASTA file. It was created because my transcriptome reconstruction with cufflinks was taking FOREVER and seem to be "sticking" at one of the contigs that are included in the full genome sequence that is downloaded from UCSC genome browser. It eliminates all of the contigs and the MT chromosome (that may not be such a great idea).
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