Vitamin B2 Production by Vaginal Lactobacilli

Running quarto scripts

The analyses are written in quarto (combining python/R). For more information, see: https://quarto.org/docs/get-started/.

If you can't be bothered, you can also isolate the python code between ```{python} codeblocks or the `R` code between \{R} ``` code blocks.

Structure

This repository contains the scripts used in the paper "Vitamin B2 Production by Vaginal Lactobacilli Promotes Symbiosis". The scripts are subdivided in the following three parts:

• riboflavin_genes : the phylogenetical analysis of LAB isolates and the presence/absence of riboflavin genes
• riboflavin_mbiome : the association between vaginal microbiome and riboflavin metabolites
• riboflavin_MT : the association between vaginal metatranscriptome and riboflavin transcription

Explanation on the scripts used for the different parts of the analysis can be found in the docs folder.

The actual quarto analysis scripts can be found under the analysis directory.