v0.6.4

Changelog

• Fix major PCC calculation bug
• Make quantile normalization default to false
• do not require refgen version and organism when building databases
• to to auto install apsw if its not found
• update to python 3.7 (and restrict to between 3.6-3.7)
• code formatting using python Black
• update dependencies
• fix various updates with newer libs
• let setuptools cythonize code
• small updates the heatmap plot and network plot

v0.6.3

Change Log

This release is a hot patch due to some dependency issues.
Deps have been frozen to specific versions.

v0.6.2

Change Log

• Lots of minor CLI modifications / fixes
• Code clean up / removing dead code
• Updated/upgraded network plotting functions
• Better integrated documentation
• Implemented an MCL comparison between networks
• Fix pandas dependency bug (require <0.24)

v0.6.1

ChangeLog

• Streamline GO enrichment CLI command
• Expand listing options in CLI ls command
• Update Camoco Logo
• Add a positions functions that stores networks node coordinates
• Add fastclustering for hierarchical clustering
• Enforce defaults for quantile normalization
• Much nicer gene expression heatmap plots
• Add a forceAtlas2 layout algorithm for network plots

v0.6.0

Changelog

• Various bugfixes
• Add docker file for Cyverse
• Update CLI to allow input from command line for overlap command
• migrate database backend to minus80
• Change MCL algorithm to a python implementation
• Fully support setuptools / pip!!!

v0.5.0

Camoco Paper Release

V0.4.1

Bugfixes and incremental methods added.

v0.4.0

This is a usable version of Camoco