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Merged
skaliy merged 5 commits into from
Jan 20, 2026
Merged

Dev #49

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e6e50b8
fix: update imagedata to 3.8.14
skaliy Jan 19, 2026
6458dc1
ci: add PyPI release workflow, update imagedata to 3.8.14, bump to v0…
skaliy Jan 19, 2026
9d98602
chore: bump version to 0.5.3
skaliy Jan 19, 2026
4aad95a
feat: add new metrics and enhance MedDataset
skaliy Jan 20, 2026
3db7477
Merge branch 'main' into dev
skaliy Jan 20, 2026
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15 changes: 15 additions & 0 deletions .gitignore
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Expand Up @@ -154,3 +154,18 @@ data/

#Models
models/
*.pkl
*.pth

# Claude
.claude/
CLAUDE*.md

# nbdev processed notebooks
_proc/

# Cline
.clinerules

# MLflow
mlruns/
2 changes: 1 addition & 1 deletion fastMONAI/__init__.py
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@@ -1 +1 @@
__version__ = "0.5.3"
__version__ = "0.5.4"
52 changes: 30 additions & 22 deletions fastMONAI/_modidx.py
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Expand Up @@ -12,12 +12,18 @@
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset._get_data_info': ( 'dataset_info.html#meddataset._get_data_info',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset._visualize_single_case': ( 'dataset_info.html#meddataset._visualize_single_case',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset.get_largest_img_size': ( 'dataset_info.html#meddataset.get_largest_img_size',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset.get_volume_summary': ( 'dataset_info.html#meddataset.get_volume_summary',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset.suggestion': ( 'dataset_info.html#meddataset.suggestion',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset.summary': ( 'dataset_info.html#meddataset.summary',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.MedDataset.visualize_cases': ( 'dataset_info.html#meddataset.visualize_cases',
'fastMONAI/dataset_info.py'),
'fastMONAI.dataset_info.get_class_weights': ( 'dataset_info.html#get_class_weights',
'fastMONAI/dataset_info.py')},
'fastMONAI.external_data': { 'fastMONAI.external_data.MURLs': ('external_data.html#murls', 'fastMONAI/external_data.py'),
Expand Down Expand Up @@ -202,33 +208,13 @@
'fastMONAI.vision_core.MedImage': ('vision_core.html#medimage', 'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.MedMask': ('vision_core.html#medmask', 'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.MetaResolver': ('vision_core.html#metaresolver', 'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback': ( 'vision_core.html#vscodeprogresscallback',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.__init__': ( 'vision_core.html#vscodeprogresscallback.__init__',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback._detect_vscode_environment': ( 'vision_core.html#vscodeprogresscallback._detect_vscode_environment',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.after_batch': ( 'vision_core.html#vscodeprogresscallback.after_batch',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.after_fit': ( 'vision_core.html#vscodeprogresscallback.after_fit',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.after_validate': ( 'vision_core.html#vscodeprogresscallback.after_validate',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.before_epoch': ( 'vision_core.html#vscodeprogresscallback.before_epoch',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.before_fit': ( 'vision_core.html#vscodeprogresscallback.before_fit',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.VSCodeProgressCallback.before_validate': ( 'vision_core.html#vscodeprogresscallback.before_validate',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core._load_and_preprocess': ( 'vision_core.html#_load_and_preprocess',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core._multi_channel': ( 'vision_core.html#_multi_channel',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core._preprocess': ('vision_core.html#_preprocess', 'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.med_img_reader': ( 'vision_core.html#med_img_reader',
'fastMONAI/vision_core.py'),
'fastMONAI.vision_core.setup_vscode_progress': ( 'vision_core.html#setup_vscode_progress',
'fastMONAI/vision_core.py')},
'fastMONAI/vision_core.py')},
'fastMONAI.vision_data': { 'fastMONAI.vision_data.MedDataBlock': ('vision_data.html#meddatablock', 'fastMONAI/vision_data.py'),
'fastMONAI.vision_data.MedDataBlock.__init__': ( 'vision_data.html#meddatablock.__init__',
'fastMONAI/vision_data.py'),
Expand Down Expand Up @@ -285,14 +271,36 @@
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.binary_hausdorff_distance': ( 'vision_metrics.html#binary_hausdorff_distance',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.binary_lesion_detection_rate': ( 'vision_metrics.html#binary_lesion_detection_rate',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.binary_precision': ( 'vision_metrics.html#binary_precision',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.binary_sensitivity': ( 'vision_metrics.html#binary_sensitivity',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.binary_signed_rve': ( 'vision_metrics.html#binary_signed_rve',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.calculate_confusion_metrics': ( 'vision_metrics.html#calculate_confusion_metrics',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.calculate_dsc': ( 'vision_metrics.html#calculate_dsc',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.calculate_haus': ( 'vision_metrics.html#calculate_haus',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.calculate_lesion_detection_rate': ( 'vision_metrics.html#calculate_lesion_detection_rate',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.calculate_signed_rve': ( 'vision_metrics.html#calculate_signed_rve',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.multi_dice_score': ( 'vision_metrics.html#multi_dice_score',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.multi_hausdorff_distance': ( 'vision_metrics.html#multi_hausdorff_distance',
'fastMONAI/vision_metrics.py')},
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.multi_lesion_detection_rate': ( 'vision_metrics.html#multi_lesion_detection_rate',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.multi_precision': ( 'vision_metrics.html#multi_precision',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.multi_sensitivity': ( 'vision_metrics.html#multi_sensitivity',
'fastMONAI/vision_metrics.py'),
'fastMONAI.vision_metrics.multi_signed_rve': ( 'vision_metrics.html#multi_signed_rve',
'fastMONAI/vision_metrics.py')},
'fastMONAI.vision_plot': { 'fastMONAI.vision_plot._get_slice': ('vision_plot.html#_get_slice', 'fastMONAI/vision_plot.py'),
'fastMONAI.vision_plot.find_max_slice': ( 'vision_plot.html#find_max_slice',
'fastMONAI/vision_plot.py'),
Expand Down
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