Updating TcellExTRECT to allow cram support and bug fix so that function medianexoncoverage doesnt error when all exons removed#32
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arihueb wants to merge 3 commits intoMcGranahanLab:mainfrom
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arihueb
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Updated getCovFromBam function to also allow cram files as input. This is backwards compatible with the current version. For cram input set |
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The distinct function throws an error when all exons are removed due to low coverage. I've added a quick check whether the object is null. In cases where all exons are removed, it will return an empty tibble; otherwise it will return the object as before.