MitchellAcoustics · MitchellAcoustics · Oct 2, 2025 · May 15, 2025 · May 15, 2025 · May 15, 2025
diff --git a/.github/workflows/tag-release.yml b/.github/workflows/tag-release.yml
@@ -47,16 +47,6 @@ jobs:
             exit 1
           fi
 
-      - name: Verify version matches pyproject.toml
-        run: |
-          VERSION_STR=${{ steps.release.outputs.version_str }}
-          TOML_VERSION=$(grep -oP '^version = "\K[^"]+' pyproject.toml)
-
-          if [ "${VERSION_STR}" != "${TOML_VERSION}" ]; then
-          echo "Error: Tag version (${VERSION_STR}) does not match pyproject.toml version (${TOML_VERSION})"
-          exit 1
-          fi
-
   setup_and_build:
     needs:
       - details
@@ -127,14 +117,14 @@ jobs:
           command: python -m pip install "soundscapy[audio]==${{ needs.details.outputs.version_str }}"
       - run: python -c "import soundscapy; print(soundscapy.__version__); from soundscapy import Binaural"
 
-      - name: Install soundscapy[all] from TestPyPI
-        uses: nick-fields/retry@v3
-        with:
-          timeout_minutes: 5
-          max_attempts: 3
-          retry_wait_seconds: 30
-          command: python -m pip install "soundscapy[all]==${{ needs.details.outputs.version_str }}"
-      - run: python -c "import soundscapy; print(soundscapy.__version__); from soundscapy import Binaural"
+      # - name: Install soundscapy[all] from TestPyPI
+      #   uses: nick-fields/retry@v3
+      #   with:
+      #     timeout_minutes: 5
+      #     max_attempts: 3
+      #     retry_wait_seconds: 30
+      #     command: python -m pip install "soundscapy[all]==${{ needs.details.outputs.version_str }}"
+      # - run: python -c "import soundscapy; print(soundscapy.__version__); from soundscapy import Binaural"
 
   github_release:
     name: Create GitHub Release

diff --git a/.github/workflows/test-tag-release.yml b/.github/workflows/test-tag-release.yml
@@ -114,11 +114,11 @@ jobs:
           command: python -m pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ "soundscapy[audio]==${{ needs.details.outputs.version_str }}"
       - run: python -c "import soundscapy; print(soundscapy.__version__); from soundscapy import Binaural"
 
-      - name: Install soundscapy[all] from TestPyPI
-        uses: nick-fields/retry@v3
-        with:
-          timeout_minutes: 5
-          max_attempts: 3
-          retry_wait_seconds: 30
-          command: python -m pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ "soundscapy[all]==${{ needs.details.outputs.version_str }}"
-      - run: python -c "import soundscapy; print(soundscapy.__version__); from soundscapy import Binaural"
+      # - name: Install soundscapy[all] from TestPyPI
+      #   uses: nick-fields/retry@v3
+      #   with:
+      #     timeout_minutes: 5
+      #     max_attempts: 3
+      #     retry_wait_seconds: 30
+      #     command: python -m pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ "soundscapy[all]==${{ needs.details.outputs.version_str }}"
+      # - run: python -c "import soundscapy; print(soundscapy.__version__); from soundscapy import Binaural"
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -37,7 +37,7 @@ jobs:
       fail-fast: false
       matrix:
         python-version: ["3.10", "3.11", "3.12"]
-        factor: [core, audio, spi, all, tutorials]
+        factor: [core, audio, r, all, tutorials]
 
     steps:
       - name: Checkout repository

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -250,7 +250,7 @@ Each environment is configured to run the appropriate tests:
 
 Test selection is implemented using pytest's keyword-based filtering to precisely target the right tests:
 
-```python
+```bash
 # Core tests only
 pytest -k "not optional_deps"
 

diff --git a/MANIFEST.in b/MANIFEST.in
@@ -0,0 +1,10 @@
+recursive-include included *
+include pyproject.toml
+include MANIFEST.in
+include src/soundscapy/data/*
+
+recursive-exclude excluded *
+exclude test/test_audio_files/trimmed_CT101.wav
+exclude test/test_audio_files/trimmed_CT102.wav
+exclude test/test_audio_files/trimmed_CT103.wav
+exclude test/test_audio_files/trimmed_CT104.wav
diff --git a/conftest.py b/conftest.py
@@ -1,5 +1,6 @@
 """Configure pytest for soundscapy testing."""
 
+import importlib
 import os
 
 import pytest
@@ -15,8 +16,8 @@ def _check_dependencies(group: str) -> bool:
     if group not in _dependency_cache:
         try:
             if group == "audio":
-                # Try importing audio-related modules using importlib.util for availability check
-                import importlib.util
+                # Try importing audio-related modules
+                # using importlib.util for availability check
 
                 deps = ["mosqito", "maad", "tqdm", "acoustic_toolbox"]
                 all_available = all(
@@ -27,13 +28,11 @@ def _check_dependencies(group: str) -> bool:
                     logger.debug(f"{group} dependencies found")
                 else:
                     logger.debug(f"{group} dependencies missing")
-            elif group == "spi":
-                # Check SPI dependencies
-                import importlib.util
-
-                spi_available = importlib.util.find_spec("rpy2") is not None
-                _dependency_cache[group] = spi_available
-                if spi_available:
+            elif group in {"r", "spi", "satp"}:
+                # Check R dependencies
+                r_available = importlib.util.find_spec("rpy2") is not None
+                _dependency_cache[group] = r_available
+                if r_available:
                     logger.debug(f"{group} dependencies found")
                 else:
                     logger.debug(f"{group} dependencies missing")
@@ -53,7 +52,9 @@ def pytest_ignore_collect(collection_path):
     # Map module paths to their dependency groups
     module_deps = {
         "audio/": "audio",
+        "r_wrapper/": "r",
         "spi/": "spi",
+        "satp/": "satp",
         # Add new optional module paths here
     }
 
@@ -77,7 +78,7 @@ def pytest_configure(config):
     )
 
     # Define known dependency groups
-    dependency_groups = ["audio", "spi"]
+    dependency_groups = ["audio", "r", "spi", "satp"]
     for group in dependency_groups:
         env_var = f"{group.upper()}_DEPS"
         os.environ[env_var] = "1" if _check_dependencies(group) else "0"

diff --git a/docs/reference/api.md b/docs/reference/api.md
diff --git a/docs/reference/audio.md b/docs/reference/audio.md
diff --git a/docs/reference/databases.md b/docs/reference/databases.md
diff --git a/docs/reference/plotting.md b/docs/reference/plotting.md
diff --git a/docs/reference/plotting/defaults.md b/docs/reference/plotting/defaults.md
diff --git a/docs/reference/plotting/iso_plot.md b/docs/reference/plotting/iso_plot.md
diff --git a/docs/reference/plotting/layers.md b/docs/reference/plotting/layers.md
diff --git a/docs/reference/plotting/likert.md b/docs/reference/plotting/likert.md
diff --git a/docs/reference/plotting/param_models.md b/docs/reference/plotting/param_models.md
diff --git a/docs/reference/plotting/plot_context.md b/docs/reference/plotting/plot_context.md
diff --git a/docs/reference/plotting/plot_functions.md b/docs/reference/plotting/plot_functions.md
diff --git a/docs/reference/spi.md b/docs/reference/spi.md
diff --git a/docs/reference/spi/msn.md b/docs/reference/spi/msn.md
diff --git a/docs/reference/surveys.md b/docs/reference/surveys.md