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delete SS link #66

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Merged
keitaroyam merged 1 commit into from
Jan 9, 2026
Merged

delete SS link #66

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42 changes: 0 additions & 42 deletions links_and_mods.cif
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,6 @@ _chem_link.name
DG9-SER DG9 DG9m1 NON-POLYMER SER SERm1 peptide DG9-SER
DNA-SER . DEL_OP3 DNA/RNA SER SERm1 peptide DNA-SER
DNA-TYR . DEL_OP3 DNA/RNA TYR TYRmod5 peptide DNA-TYR
SS . CYS-SS peptide . CYS-SS peptide SS-bridge
disulf CYS CYS-SS peptide CYS CYS-SS peptide SS-bridge
CYS-MPR CYS CYS-SS peptide MPR MPRm1 NON-POLYMER SS-bridge
TRANS . DEL-OXT peptide . DEL-HN1 peptide TRANS
Expand Down Expand Up @@ -427,47 +426,6 @@ _chem_link_chir.atom_id_3
_chem_link_chir.volume_sign
DNA-TYR 1 P 1 "O5'" 2 OH 1 OP2 both

data_link_SS
loop_
_chem_link_bond.link_id
_chem_link_bond.atom_1_comp_id
_chem_link_bond.atom_id_1
_chem_link_bond.atom_2_comp_id
_chem_link_bond.atom_id_2
_chem_link_bond.type
_chem_link_bond.value_dist
_chem_link_bond.value_dist_esd
SS 1 SG 2 SG single 2.031 .020

loop_
_chem_link_angle.link_id
_chem_link_angle.atom_1_comp_id
_chem_link_angle.atom_id_1
_chem_link_angle.atom_2_comp_id
_chem_link_angle.atom_id_2
_chem_link_angle.atom_3_comp_id
_chem_link_angle.atom_id_3
_chem_link_angle.value_angle
_chem_link_angle.value_angle_esd
SS 1 CB 1 SG 2 SG 103.800 1.800
SS 1 SG 2 SG 2 CB 103.800 1.800

loop_
_chem_link_tor.link_id
_chem_link_tor.id
_chem_link_tor.atom_1_comp_id
_chem_link_tor.atom_id_1
_chem_link_tor.atom_2_comp_id
_chem_link_tor.atom_id_2
_chem_link_tor.atom_3_comp_id
_chem_link_tor.atom_id_3
_chem_link_tor.atom_4_comp_id
_chem_link_tor.atom_id_4
_chem_link_tor.value_angle
_chem_link_tor.value_angle_esd
_chem_link_tor.period
SS ss 1 CB 1 SG 2 SG 2 CB 90.00 10.0 2

data_link_disulf
loop_
_chem_link_bond.link_id
Expand Down
42 changes: 0 additions & 42 deletions list/mon_lib_list.cif
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Original file line number Diff line number Diff line change
Expand Up @@ -36352,7 +36352,6 @@ _chem_link.name
DG9-SER DG9 DG9m1 NON-POLYMER SER SERm1 peptide DG9-SER
DNA-SER . DEL_OP3 DNA/RNA SER SERm1 peptide DNA-SER
DNA-TYR . DEL_OP3 DNA/RNA TYR TYRmod5 peptide DNA-TYR
SS . CYS-SS peptide . CYS-SS peptide SS-bridge
disulf CYS CYS-SS peptide CYS CYS-SS peptide SS-bridge
CYS-MPR CYS CYS-SS peptide MPR MPRm1 NON-POLYMER SS-bridge
TRANS . DEL-OXT peptide . DEL-HN1 peptide TRANS
Expand Down Expand Up @@ -36768,47 +36767,6 @@ _chem_link_chir.atom_id_3
_chem_link_chir.volume_sign
DNA-TYR 1 P 1 "O5'" 2 OH 1 OP2 both

data_link_SS
loop_
_chem_link_bond.link_id
_chem_link_bond.atom_1_comp_id
_chem_link_bond.atom_id_1
_chem_link_bond.atom_2_comp_id
_chem_link_bond.atom_id_2
_chem_link_bond.type
_chem_link_bond.value_dist
_chem_link_bond.value_dist_esd
SS 1 SG 2 SG single 2.031 .020

loop_
_chem_link_angle.link_id
_chem_link_angle.atom_1_comp_id
_chem_link_angle.atom_id_1
_chem_link_angle.atom_2_comp_id
_chem_link_angle.atom_id_2
_chem_link_angle.atom_3_comp_id
_chem_link_angle.atom_id_3
_chem_link_angle.value_angle
_chem_link_angle.value_angle_esd
SS 1 CB 1 SG 2 SG 103.800 1.800
SS 1 SG 2 SG 2 CB 103.800 1.800

loop_
_chem_link_tor.link_id
_chem_link_tor.id
_chem_link_tor.atom_1_comp_id
_chem_link_tor.atom_id_1
_chem_link_tor.atom_2_comp_id
_chem_link_tor.atom_id_2
_chem_link_tor.atom_3_comp_id
_chem_link_tor.atom_id_3
_chem_link_tor.atom_4_comp_id
_chem_link_tor.atom_id_4
_chem_link_tor.value_angle
_chem_link_tor.value_angle_esd
_chem_link_tor.period
SS ss 1 CB 1 SG 2 SG 2 CB 90.00 10.0 2

data_link_disulf
loop_
_chem_link_bond.link_id
Expand Down