If this code is used in a publication, please cite the manuscript:
"Single pulse electrical stimulation in white matter modulates iEEG visual responses in human early visual cortex",
by H. Huang, K.N. Kay, N.M. Gregg, G. Ojeda Valencia, M. In, C. Kapeller, Y. Shu, G.A. Worrell, K.J. Miller, and D. Hermes.

The manuscript is currently under review at PLOS Computational Biology. A preprint is available on biorxiv: https://doi.org/10.1101/2025.05.05.652264.

Correspondence:
H Huang: huang.harvey@mayo.edu; D Hermes: hermes.dora@mayo.edu.

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DEPENDENCIES

- mnl_ieegBasics: https://github.com/MultimodalNeuroimagingLab/mnl_ieegBasics
- knkutils: https://github.com/cvnlab/knkutils
- scientific color maps: https://www.fabiocrameri.ch/colourmaps/
- distributionplot: https://www.mathworks.com/matlabcentral/fileexchange/23661-violin-plots-for-plotting-multiple-distributions-distributionplot-m

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USAGE

a. The data used in this analysis is in BIDS format on OpenNeuro: ds006485. It contains the data needed to generate all results and figures. It will be made publicly available upon manuscript acceptance. Download and copy the data files to a folder in the working directory named "data".

b. All custom analyses were performed in MATLAB R2023a. Step-by-step code blocks and instructions to generate all manuscript figures and results are in "main.m". Please open "main.m and follow the code sections contained therein.