selection(v2.2.3): no‑ML shortlist pipeline (brightness + spectral/family diversity) #6
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Implements the lab-driven selection pipeline without ML, per your brief.
What’s included
scripts/extend_table_qy_ec.py— adds QY, EC, brightness, photostability columns to the balanced table; brightness computed where both QY/EC present.scripts/select_shortlist_noml.py— selects 12 candidates by: brightness top‑30 → KMeans in (excitation, emission) → 1 per cluster → Calcium ≤3 → export CSV + spectral figure.reports/SHORTLIST_SELECTION_RATIONALE_v2_2_3.md— rationale and GO criteria.requirements.txt(pinned).Does not touch
master. Targets a dedicated branch.Next
deliverables/lab_v2_2_3/(shortlist_top12_final.csv, plate layouts, filters, protocol) once QY/EC are populated.