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Add emit and machinelearning python envs #2

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Add emit and machinelearning python envs #2

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634e428
add emit and machinelearning python env
rwegener2 May 16, 2024
1982ee3
fix typo
rwegener2 May 16, 2024
77502c1
fix another typo
rwegener2 May 16, 2024
304adde
override cuda error
rwegener2 May 16, 2024
7119f9f
add cudatoolkit
rwegener2 May 16, 2024
e2bfe71
combine ipykernel and tensorflwo installs
rwegener2 May 16, 2024
bf74809
combine ipykernel with lpdaac_emit env creation
rwegener2 May 16, 2024
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Expand Up @@ -12,3 +12,14 @@ cp custom_jupyter_server_config.json ${NB_PYTHON_PREFIX}/etc/jupyter/jupyter_not
wget https://github.com/emit-sds/SpectralUnmixing/archive/refs/tags/v0.2.3.zip -P /home/jovyan/
unzip /home/jovyan/v0.2.3.zip -d /home/jovyan/
rm /home/jovyan/v0.2.3.zip

# Create individual Python environments
# 1 - machine learning env
conda create -n machinelearning ipykernel tensorflow
python -m ipykernel install --user --name machinelearning --display-name "machinelearning"

# 2 - emit environment
conda create -n lpdaac_emit -c conda-forge python=3.10 fiona=1.8.22 gdal hvplot geoviews rioxarray rasterio geopandas earthaccess h5py h5netcdf spectral scikit-image seaborn dask ray-default ipykernel
git clone --depth 1 --branch v1.3.0 https://github.com/emit-sds/emit-utils.git /home/jovyan/emit-utils
conda activate lpdaac_emit && pip install -e /home/jovyan/emit-utils/
python -m ipykernel install --user --name lpdaac_emit --display-name "lpdaac_emit"