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A collection of tools, workflows and example pipelines for structural modelling, ligand preparation, docking and molecular dynamics simulations.

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Computational Drug Discovery Toolkit

Software tools for molecular modelling, simulation, and computer-aided drug discovery.

Scope

  • Molecular docking
  • Molecular dynamics setup and analysis
  • Free energy calculations
  • Structure preparation

Designed for use with GROMACS, AutoDock Vina, and related software on HPC systems.

Status

Under active development.

Contact

Neil Thomson — University of Oslo
neil.thomson@farmasi.uio.no

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A collection of tools, workflows and example pipelines for structural modelling, ligand preparation, docking and molecular dynamics simulations.

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