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Update ESM4.2 yaml format #31

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90dc3bf
#28 update yaml format
Mar 18, 2026
9960f79
#28 Add settings.yaml
Mar 18, 2026
2a65f99
#28 add workflow section
Mar 18, 2026
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73 changes: 36 additions & 37 deletions ESM4p2/compile.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -44,43 +44,42 @@ compile:
"https://github.com/NOAA-GFDL/ocean_BGC.git" ]
branch: [ "dev/gfdl", *OCEAN_BGC_GIT_TAG ] # cant use property for mom6 since its a commit hash instead of a branch
otherFlags: !join [ *FMSincludes, " ", *MOMincludes ]
additionalInstructions: |
pushd mom6/MOM6-examples
git checkout 40e3937 # this is just the value of MOM6_GIT_TAG property, can't seem to use variable
popd
# this step might be covered by initial checkout since the default is recursive
git submodule update --recursive --init mom6/MOM6-examples/src/MOM6 mom6/MOM6-examples/src/SIS2 mom6/MOM6-examples/src/icebergs
# checkout dev/gfdl on the icebergs submodule
pushd mom6/MOM6-examples/src/icebergs
git checkout dev/gfdl
popd
# this is different than the MOM6_GIT_TAG above since its pulling a submodule not the whole repo
if [[ $MOM6_GIT_FIX ]]; then
echo WARNING: Checking out MOM6_GIT_FIX, set to: $MOM6_GIT_FIX
pushd mom6/MOM6-examples/src/MOM6/
git checkout $MOM6_GIT_FIX
popd
fi
if [[ $SIS2_GIT_FIX ]]; then
echo WARNING: Checking out SIS2_GIT_FIX, set to: $SIS2_GIT_FIX
pushd mom6/MOM6-examples/src/SIS2/
git checkout $SIS2_GIT_FIX
popd
fi
# link in dataset
pushd mom6/MOM6-examples
# skip the check for orion
#set platform_domain = `perl -T -e "use Net::Domain(hostdomain) ; print hostdomain"`
#if ("${platform_domain}" =~ *"MsState"* ) then
# ln -s /work/noaa/gfdlscr/pdata/gfdl/gfdl_O/datasets/ .datasets
#else
ln -s /gpfs/f5/gfdl_o/world-shared/datasets .datasets
#endif
popd
test -e mom6/.datasets
if [[ $status != 0 ]]; then
echo ""; echo "" ; echo " WARNING: .datasets link in MOM6 examples directory is invalid"; echo ""; echo ""
fi
additionalInstructions: !join ["pushd mom6/MOM6-examples \n",
"git checkout", *MOM6_GIT_TAG, "\n",
"popd \n",
# this step might be covered by initial checkout since the default is recursive
"git submodule update --recursive --init mom6/MOM6-examples/src/MOM6 mom6/MOM6-examples/src/SIS2 mom6/MOM6-examples/src/icebergs \n",
# checkout dev/gfdl on the icebergs submodule
"pushd mom6/MOM6-examples/src/icebergs \n",
"git checkout dev/gfdl \n",
"popd \n",
# this is different than the MOM6_GIT_TAG above since its pulling a submodule not the whole repo
"if [[ $MOM6_GIT_FIX ]]; then \n",
" echo WARNING: Checking out MOM6_GIT_FIX, set to: $MOM6_GIT_FIX \n",
" pushd mom6/MOM6-examples/src/MOM6/ \n",
" git checkout $MOM6_GIT_FIX \n",
" popd \n",
"fi \n",
"if [[ $SIS2_GIT_FIX ]]; then \n",
" echo WARNING: Checking out SIS2_GIT_FIX, set to: $SIS2_GIT_FIX \n",
" pushd mom6/MOM6-examples/src/SIS2/ \n",
" git checkout $SIS2_GIT_FIX \n",
" popd \n",
"fi \n",
# link in dataset
"pushd mom6/MOM6-examples\n",
# skip the check for orion
#set platform_domain = `perl -T -e "use Net::Domain(hostdomain) ; print hostdomain"`
#if ("${platform_domain}" =~ *"MsState"* ) then
# ln -s /work/noaa/gfdlscr/pdata/gfdl/gfdl_O/datasets/ .datasets
#else
"ln -s /gpfs/f5/gfdl_o/world-shared/datasets .datasets \n",
#endif
"popd \n",
"test -e mom6/.datasets \n",
"if [[ $status != 0 ]]; then \n",
' echo ""; echo "" ; echo " WARNING: .datasets link in MOM6 examples directory is invalid"; echo ""; echo "" \n',
"fi"]
cppdefs: "-DMAX_FIELDS_=100 -DNOT_SET_AFFINITY -D_USE_MOM6_DIAG -D_USE_GENERIC_TRACER -DUSE_PRECISION=2"
paths: [ "mom6/MOM6-examples/src/MOM6/config_src/infra/FMS2",
"mom6/MOM6-examples/src/MOM6/config_src/memory/dynamic_symmetric",
Expand Down
29 changes: 4 additions & 25 deletions ESM4p2/esm4.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -50,37 +50,16 @@ build:
compileYaml: "compile.yaml"
platformYaml: "../platforms.yaml"

shared:
# directories shared across tools
# shamelessly stolen from am5 example
directories: &shared_directories
history_dir: !join [/archive/$USER/, *FRE_STEM, /, *name, /, *platform, -, *target, /, history]
pp_dir: !join [/archive/$USER/, *FRE_STEM, /, *name, /, *platform, -, *target, /, pp]
analysis_dir: !join [/nbhome/$USER/, *FRE_STEM, /, *name]
ptmp_dir: "/xtmp/$USER/ptmp"
fre_analysis_home: "/home/fms/local/opt/fre-analysis/test"

# shared pp settings
# also shamelessly stolen from am5 example
postprocess:
settings: &shared_settings
history_segment: "P1Y"
site: "ppan"
switches: &shared_switches
do_statics: True
do_timeavgs: True
clean_work: True
do_refinediag: False
do_atmos_plevel_masking: True
do_preanalysis: False
do_analysis: True

experiments:
- name: "ESM4p2_piControl_spinup_J"
settings: "settings.yaml"
pp:
- name: "ESM4p2_piControl_spinup_Jb"
settings: "settings.yaml"
pp:
- name: "ESM4p2_piControl_spinup_J_redoyr450_btmdiags"
settings: "settings.yaml"
pp:
- name: "ESM4p2_piControl_spinup_J_redoyr450"
settings: "settings.yaml"
pp:
26 changes: 26 additions & 0 deletions ESM4p2/settings.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,26 @@
directories:
history_dir: !join [/archive/$USER/, *FRE_STEM, /, *name, /, *platform, -, *target, /, history]
pp_dir: !join [/archive/$USER/, *FRE_STEM, /, *name, /, *platform, -, *target, /, pp]
analysis_dir: !join [/nbhome/$USER/, *FRE_STEM, /, *name]
ptmp_dir: "/xtmp/$USER/ptmp"
fre_analysis_home: "/home/fms/local/opt/fre-analysis/test"

postprocess:
workflow:
repository: "https://github.com/NOAA-GFDL/fre-workflows"
version: "2026.01-alpha1"
settings:
history_segment: "P1Y"
site: "ppan"
# pp_chunks:
# pp_start:
# pp_stop:
# pp_grid_spec:
switches:
do_timeavgs: True
clean_work: True
do_refinediag: False
do_atmos_plevel_masking: True
do_preanalysis: False
do_analysis: True
do_analysis_only: False