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Merge with EMC #ce5f3b1 (2024Nov21) #65

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jderrico-noaa merged 55 commits intoNOAA-GSL:global-workflowfrom
kayeekayee:2024Nov21_ce5f3b1
Mar 4, 2025
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Merge with EMC #ce5f3b1 (2024Nov21) #65
jderrico-noaa merged 55 commits intoNOAA-GSL:global-workflowfrom
kayeekayee:2024Nov21_ce5f3b1

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weihuang-jedi and others added 30 commits April 26, 2024 23:29
@weihuang-jedi
add module for AWS (NOAA-EMC#934)
88493f3 
* add module for AWS

* comment that this is for NOAA Cloud
@EricJames-NOAA
RRFS updates (NOAA-EMC#938)
13d5b6d 
* Initial commit to rename RRFS fix files, update EBB to be vertically integrated from 3D ebu_smoke, and switch to use 1-h average HWP.

* Getting rid of vertically integrated hydrometeor fields.

* Updating postxconfig-NT-rrfs.txt
@DavidBurrows-NCO
add cmake load to modulefile/gaea.lua (NOAA-EMC#945)
d4527d9
@FernandoAndrade-NOAA @WenMeng-NOAA
Additional RT log information (NOAA-EMC#941)
1956adb 
* additional log info

* Update rt.sh

* Update rt.sh

* hera RT pass

* orion RT pass

* orion submodule hash fix

* hercules RT pass

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
@jaymes-kenyon @WenMeng-NOAA @FernandoAndrade-NOAA
Updates to the GSL exp1 ceiling diagnostic (NOAA-EMC#947)
14d6613 
* Updates to the GSL ceiling exp1 diagnostic:
1) reducing the threshold cloud fraction to detect a ceiling (from 0.50 to 0.41)
2) revamping the code for detecting shallow fog

* hera RT log

* orion RT log

* hercules RT log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@EricJames-NOAA @WenMeng-NOAA @FernandoAndrade-NOAA
Clean up labeling for 15-min accumulated fields (NOAA-EMC#948)
b0e574b 
* Initial commit for 15-min QPF output

* Changes for 15-min bucketing in RRFS.

* Cleaning up code.

* Changes to output additional bucket fields.

* Adding other 15-min winter weather diagnostics

* Small comment changes.

* Reverting changes in rrfs_postcntrl.xml and postxconfig.txt

* Adding sub-hourly control files for RRFS

* Adding change log entries.

* Updating makefile for sub-hourly RRFS control files.

* Modification to if statement in grib2_module.f for sub-hourly output.

* hera RTs passed

* hercules RTs passed

* orion RTs passed

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: Fernando Andrade - NOAA <121964418+FernandoAndrade-NOAA@users.noreply.github.com>
@dependabot @WenMeng-NOAA
Bump jinja2 from 3.1.3 to 3.1.4 in /doc/UserGuide (NOAA-EMC#953)
0eeb5b6 
Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](pallets/jinja@3.1.3...3.1.4)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
@YaliMao-NOAA @WenMeng-NOAA @FernandoAndrade-NOAA
update gtg code revision to v.4.16.3 (NOAA-EMC#954)
f16b372 
* update gtg code revision to v.4.16.3

* orion RTs passed

* hercules RTs passed

* hera RTs passed

---------

Co-authored-by: yali mao <yali.mao@clogin01.cactus.wcoss2.ncep.noaa.gov>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@christinaholtNOAA
Update Namelist documentation for all namelist options (NOAA-EMC#940)
f7bc0cb 
* Adding docs for namelist.

* Reformat.

* Fixes to compile docs.

* Mods from review comments.
@EricJames-NOAA @WenMeng-NOAA
Add hourly averaged smoke PM2.5 and dust PM10 (NOAA-EMC#917)
514cff0 
* Initial commit for hourly averaged smoke and dust.

* Getting rid of an extraneous variable in fv3lam_rrfs.xml and reverting changes to modulefiles

* Reverting change in CLDRAD.f

* Updating fix file.

* Updating modulefiles with the latest installed g2tmpl.

* Updating s4.lua for latest g2tmpl.

* Updating postxconfig-NT-rrfs.txt

* Updating wcoss2 modulefile

* bump g2tmpl to 1.12.0 in ci/spack.yaml

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: Wen Meng <wen.meng@noaa.gov>
@EricJames-NOAA
Updates to use GRIB2 template 4.9 for QPFFFG and QPFARI variables in …
1916cb2 
…RRFS (NOAA-EMC#929)

* Updates to use GRIB2 template 4.9 for QPFFFG and QPFARI variables in RRFS.

* Updating modulefiles for latest version of g2tmpl.

* Updating s4.lua for latest g2tmpl.lua

* Updating all postxconfig files based on the new required format (change to POST-XML-Library-NT.pl)

* Updates associated with PR NOAA-EMC#956 to speed up testing.

* Removing unneeded loading of g2tmpl on Jet.
@FernandoAndrade-NOAA
Correct rt.sh paths (NOAA-EMC#957)
c6013dd 
* Update rt.sh spack-stack paths and Hercules python
@dependabot
Bump requests from 2.31.0 to 2.32.0 in /doc/UserGuide (NOAA-EMC#963)
e4e0fc2 
* ---
updated-dependencies:
- dependency-name: requests
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@KarinaAsmar-NOAA @FernandoAndrade-NOAA
Fix for hydrostatic runs - write out Omega and HGT from model output (N…
a215c43 
…OAA-EMC#959)

* write out HGT and omega from model output for hydrostatic runs

* hera RT log

* append fv3r tests hera

* hercules RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@dependabot
Bump urllib3 from 2.2.1 to 2.2.2 in /doc/UserGuide (NOAA-EMC#981)
08c2ec6 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](urllib3/urllib3@2.2.1...2.2.2)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@WenMeng-NOAA @FernandoAndrade-NOAA
Sync the RRFS hotfix NOAA-EMC#967 and NOAA-EMC#968. (NOAA-EMC#979)
d5a7944 
* Sync the RRFS hotfix NOAA-EMC#967 and NOAA-EMC#968.

* hera RT log

* hercules RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@SamuelTrahanNOAA @WenMeng-NOAA @FernandoAndrade-NOAA
UPP bugfixes for inline post and g2tmpl 1.12.0 compatibility (and num…
70fc762 
…ber concentration updates) (NOAA-EMC#974)

* number concentration and HAFS-AR xml that use it

* .txt equivalents to new .xml files

* remove synonyms and rename GSD_NC fields instead

* deallocate smoke_ave, dust_ave, and coarsepm_ave

* correct pressure levels for hafs-ar

* bugfix: fixed_sfc2_type defaults to fixed_sfc1_type

* Apply suggestions from code review

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>

* hera RT log

* hercules RT log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@DavidHuber-NOAA @FernandoAndrade-NOAA
Update Orion module file for Rocky 9 upgrade (NOAA-EMC#987)
5ecb8d9 
* Update Orion module file for Rocky 9 upgrade

* Update orion Intel version and detection

* add Orion RT log and python

* add hercules RT log

* add hera RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@WenMeng-NOAA @FernandoAndrade-NOAA
Read bucket either as an integer or float (NOAA-EMC#984)
6075237 
* Read bucket as either an integer or float

* Restrict undefined grids in calculation

* Add changes to prevent undefined PBLHGUST in calculation

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@gspetro-NOAA @jdkublnick @FernandoAndrade-NOAA
[develop]: Add Doxygen variable definitions to modules (NOAA-EMC#965)
60d1cbb 
* rm extra '='; chg docs to doc

* change docs to doc

* add 5 VRBLS2D defs

* describe module for 2D, 3D, and 4D vars

* draft missing module definitions

* add draft of module definitions

* document additional modules (draft)

* draft of missing values in modules

* draft var/func defns for GFIP3 & grib2_module

* comment out unsupported Doxyfile.in tags

* update xml_perl_data.f docs

* update wrf_io_flags.f docs

* update VRBLS4D_mod.f docs

* update several 3D vars

* 3D var updates

* format 2D vars module

* format docs for physcons.f

* format/add docs for SOIL_mod

* update format in RQSTFLD, cuparm, grib2_module

* Updated variables in VRBLS_mod.f files

* format params.f

* Updated MASKS_mod.f variables

* Defined some more missing variables

* update params.F

* update params.f

* Updated Variables in CMASSI.F and intio_tags.f

* Resolved warnings in all modules listed in this commit

* Fixing something dumb I did in intio_tags.f last commit

* Edited and added some definitions for variables

* fix Doxyfile.in @ signs

* CMASSI reformat

* CMASSI update

* update CMASSI, CTLBLK, params

* restore NFCST,NBC,LIST,IOUT,NTSTM var section in CTLBLK

* misc edits

* update LOOKUP.f

* updates to MASKS_mod and LOOKUP

* update 2d vars

* update more 2D vars

* RHGRD.f update

* CTLBLK var updates

* update more 2D vars

* more 2D vars

* more 2D vars

* more 2D vars

* more 2D vars

* uncomment sections of Doxyfile for CI/CD

* 4D vars update

* add 3d var defs

* update 3D vars and RQSTFLD

* 3D vars update

* 3D vars & typo in unified_vars table

* misc updates

* correct formatting

* add missing variables

* minor edits

* Doxyfile updates

* Doxyfile updates

* doxygenize SET_LVLSXML, misc minor edits

* rm old/unneeded comments from READ_xml.f; misc minor edits

* misc edits

* various minor doc edits

* update cuparm & misc others

* misc minor edits

* minor edits/formatting

* reformat SET_LVLSXML

* minor cuparm & xml_perl_data formatting

* add to xml_perl_data

* rm stray xmp_perl_data comment

* rm stray & in MASKS_mod

* update intio_tags.f

* update svptbl.f

* update physcons.f

* update machine.f & misc

* add back commented-out code

* undo removal of commented out code

* update user_guide.md

* format module descriptions

* update CMASSI and misc others

* fix secondary phys cons

* minor formatting/updates throughout

* formatting

* fix formatting

* fix field_info

* fix machine variables

* comment out cuparm vars that should have been commented out

* fix var defns in svptbl.f

* fix var defns in GFIP3

* fix typo

* add hera RT log

---------

Co-authored-by: Gillian Petro <gpetro@hercules-login-1.hpc.msstate.edu>
Co-authored-by: Gillian Petro <gpetro@Orion-login-2.HPC.MsState.Edu>
Co-authored-by: jdkublnick <47824899+jdkublnick@users.noreply.github.com>
Co-authored-by: Gillian Petro <gillianpetro@Gillians-Air.fios-router.home>
Co-authored-by: Gillian Petro <gillianpetro@Gillians-MBP.fios-router.home>
Co-authored-by: Fernando Andrade - NOAA <121964418+FernandoAndrade-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@dependabot @WenMeng-NOAA @FernandoAndrade-NOAA
Bump certifi from 2024.2.2 to 2024.7.4 in /doc/UserGuide (NOAA-EMC#988)
b644ccc 
* Bump certifi from 2024.2.2 to 2024.7.4 in /doc/UserGuide

Bumps [certifi](https://github.com/certifi/python-certifi) from 2024.2.2 to 2024.7.4.
- [Commits](certifi/python-certifi@2024.02.02...2024.07.04)

---
updated-dependencies:
- dependency-name: certifi
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

* add hera RT log

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@DavidBurrows-NCO
remove stack-python load for Gaea build (NOAA-EMC#993)
ecbb985
@dependabot @WenMeng-NOAA
Bump zipp from 3.17.0 to 3.19.1 in /doc/UserGuide (NOAA-EMC#991)
f4c4e63 
Bumps [zipp](https://github.com/jaraco/zipp) from 3.17.0 to 3.19.1.
- [Release notes](https://github.com/jaraco/zipp/releases)
- [Changelog](https://github.com/jaraco/zipp/blob/main/NEWS.rst)
- [Commits](jaraco/zipp@v3.17.0...v3.19.1)

---
updated-dependencies:
- dependency-name: zipp
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
@gspetro-NOAA @FernandoAndrade-NOAA
[develop]: Update requirements files (NOAA-EMC#994)
54040a8 
* update requirements files

* add hera RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@weihuang-jedi
update g2tmp on aws to 1.12.0 (NOAA-EMC#996)
47358ed
@WenMeng-NOAA @FernandoAndrade-NOAA
Relocate gfs/gefs/sfs control files (NOAA-EMC#990)
97ea655 
* Relocate gfs/gefs/sfs control files

* Update

* Rename dataset to GFSGOES in postcntrl_gfs_goes.xml

* Increase datset length.

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@lipan-NOAA @FernandoAndrade-NOAA
Enable template 4-49 to obtain aerosol ensemble information (NOAA-EMC…
81b38a8 
…#1011)

* Enable template 4-49 to obtain aerosol ensemble information

* Updated g2 and g2tmpl versions in WCOSS2 module files

* updated g2 and g2tmpl versions for R&D platforms

* Update spack.yaml g2 3.5.1 and g2tmpl 1.13.0

* add hera RT log

* add hercules RT log

* add orion RT log

---------

Co-authored-by: Fernando Andrade - NOAA <121964418+FernandoAndrade-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@FernandoAndrade-NOAA @epic-cicd-jenkins
Sample PR for testing (NOAA-EMC#1007)
977504b 
* Orion Jobs Completed.

* Update Jenkinsfile

* Update Jenkinsfile

* Orion Jobs Completed.

* typo fixes

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* remove extra jenkins test file

* revert rt.sh change

---------

Co-authored-by: epic-cicd-jenkins <ecc.platform@noaa.gov>
@gspetro-NOAA @WenMeng-NOAA
[develop]: Turn on WARN_AS_ERROR for Doxygen Documentation Builds (NO…
6c88ef4 
…AA-EMC#1023)

* turn on WARN_AS_ERROR

* enable doc build in CI Intel testing

* update CODEOWNERS file

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
@jaymes-kenyon @WenMeng-NOAA
@FernandoAndrade-NOAA @SamuelTrahanNOAA
Updates to support UPP use with MPAS (NOAA-EMC#1018)
f5e4a18 
* First draft of static control files for HFIP work.  The hfip_postcntrl.xml file is adapted from hrrr_postcntrl.xml.

* Updates to INITPOST.F, including: (1) hard-coding prec_acc_dt, (2) silencing print statements for closely spaced model levels, and (3) adding comments regarding the "T" array

* Silencing the "ZERO T" print statements in MDLFLD

* Adding read-in of netCDF "_FillValue" when SUBMODELNAME=MPAS.  For each netCDF variable, grid locations are assigned SPVAL wherever "_FillValue" is found.

* Adding static control files for RRFS-MPAS runs.

* Removing previous changes to INITPOST.F and MDLFLD.f

* Creating "INITPOST_MPAS" from "INITPOST"

* Adding call to INITPOST_MPAS

* Adding INITPOST_MPAS to CMakeLists.txt

* Modifying several write statements in INITPOST_MPAS

* Silencing print statements for model levels that are "too close" together.

* Removing temporary print statement in getVariable.f

* add hera rt log

* add orion rt log

* add hercules rt log

* add stub for ext_ncd_get_var_ti_real to compile without wrf-io lib

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
Co-authored-by: Samuel Trahan <Samuel.Trahan@noaa.gov>
FernandoAndrade-NOAA and others added 25 commits August 28, 2024 14:17
@FernandoAndrade-NOAA
Update jet.lua (NOAA-EMC#1027)
386d363
@KarinaAsmar-NOAA @WenMeng-NOAA @FernandoAndrade-NOAA
Add 6-hrly max winds at 10m to SFS (NOAA-EMC#1019)
fb6a965 
* add 6-hrly max winds at 10m

* use existing ids for max winds 422,783,784 and modify for time buckets

* remove added winds, use existing ids

* remove prints

* add if modelname for max wind speed, read once

* replace 6-hourly with temporal in notes

* keep original 1-hrly setting for fv3r and rapr

* single if block for temporal UFS buckets

* keep original max wind speed note

* time bucket option only for max wind speed, hardwired bucket for u/v

* ufs bucket options for wind speed and u/v

* remove modelname fv3r from u/v components

* add hera RT log

* add hercules RT log

* add orion RT log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@jaymes-kenyon @FernandoAndrade-NOAA
Updates to support MPAS applications (RRFS and HFIP) (NOAA-EMC#1029)
de75068 
* Various changes to support MPAS functionality, some of which are specific to HFIP.

* Updating spack-stack path on Jet

* Adding / correcting TSOIL and SOILW for RRFS-MPAS and HFIP-MPAS

* Silencing "GET FIELD" print statements

* Numerous changes to INITPOST_MPAS, including:
(1) Determining dxval, dyval, dx(i,j), and dy(i,j) for applications using a lat-lon projection
(2) Silencing several "sample" print statements

* Updating change log

* Rewriting the subroutine description and history log

* Silencing several print statements in INITPOST_MPAS

* Limiting several write statements in INITPOST_MPAS to process 0 only

* Updates to limit numerous print/write statements to process 0 only

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@EricJames-NOAA @FernandoAndrade-NOAA
Enhancements for MPAS applications (NOAA-EMC#1037)
d581f05 
* Updating to reduce volume of log files for 1-km fire weather nest.

* Changes to avoid including missing values in computations.

* Reverting some unneeded changes.

* Reverting commenting out a print statement.

* Adding control file updates from Jaymes Kenyon.

* Adding change log.

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@ChristopherHill-NOAA @WenMeng-NOAA @FernandoAndrade-NOAA
Adding SREF products to GEFS v13 (UPP NOAA-EMC#1013). (NOAA-EMC#1042)
c18ea38 
* Issue NOAA-EMC#1013 - The GEFS control file is augmented with 5 variables from
SREF.

* Issue NOAA-EMC#1013 - Additionally including [HGT,UGRD,VGRD]_ON_ISOBARIC_SURFACE
for [22500,27500] Pa.

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: christopher hill <christopher.m.hill@dlogin05.dogwood.wcoss2.ncep.noaa.gov>
Co-authored-by: christopher hill <christopher.m.hill@dlogin07.dogwood.wcoss2.ncep.noaa.gov>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@YaliMao-NOAA @WenMeng-NOAA @FernandoAndrade-NOAA
Update parm/makefile and UPP WAFS control files in plain text (NOAA-E…
aa7cdd0 
…MC#1025)

* Update UPP WAFS control files in plain text.
Add a list of WAFS control files to parm/makefile

* Re-generate GEFS UPP GTG control file in text

* update gtg code revision GTGv4.16.4

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: yali mao <yali.mao@clogin03.cactus.wcoss2.ncep.noaa.gov>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: yali mao <yali.mao@dlogin03.dogwood.wcoss2.ncep.noaa.gov>
Co-authored-by: yali mao <yali.mao@dlogin07.dogwood.wcoss2.ncep.noaa.gov>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@WenMeng-NOAA
Bump up w3emc and ip versions on WCOSS2. (NOAA-EMC#1048)
a482226
@gspetro-NOAA @WenMeng-NOAA
update user_guide.md w/versions (NOAA-EMC#1049)
cb2f3b1 
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
@DusanJovic-NOAA @WenMeng-NOAA @FernandoAndrade-NOAA
Support IntelLLVM compiler (NOAA-EMC#1001)
6f5dd62 
* Add support for IntelLLVM compiler

* add hera RT log

* add orion RT log

* add hercules RT log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: FernandoAndrade-NOAA <fernando.andrade-maldonado@noaa.gov>
@weihuang-jedi
Make UPP works with Rocky 8 on CSPs (NOAA-EMC#1034)
66a422d 
* Make UPP works with Rocky 8 on CSPs

* Remove unneeded path

* simplify modulefile
@jaymes-kenyon @WenMeng-NOAA @gspetro-NOAA
RRFS-MPAS: Provide TSOIL and SOILW (9 levels) in native-level GRIB2 f…
ae9c851 
…iles (NOAA-EMC#1054)

* Updating RRFS-MPAS control file to include TSOIL and SOILW (nine levels) within both the pressure- and native-level GRIB2 files.

* add HERA log

* add HERCULES rt log

* add ORION rt log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@WenMeng-NOAA @gspetro-NOAA
Add aerosol fields in the gefs UPP control files (NOAA-EMC#1052)
a6c1a38 
* 1)Add aerosol fields in the gefs control files; 2)relocate micro_lookup.dat files from parm subdirectory to fix subdirectory.

* add hercules rt log

* add orion rt log

* add hera rt log

---------

Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@WenMeng-NOAA @gspetro-NOAA
Add gefs inline post itag file (NOAA-EMC#1060)
72108ee 
* Add post_itag_gefs for gefs inline post; add rdaod option for gfs inline post.

* rename gfs inline post itag files.

* Rename gefs inline post itag file.

* add hera rt log

* add hercules rt log

* add orion rt logs

---------

Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@SamuelTrahanNOAA @WenMeng-NOAA @gspetro-NOAA
Clean up IFI support and add library prereqs to modulefiles (NOAA-EMC…
ef204d7 
…#1056)

* modulefile for external ifi on hera

* IFI.F: less wordy logging and faster IFI debug output

* compile_upp.sh: -B = build ifi executables & -D = option sent to cmake

* update libIFI hash

* correct argument length to eliminate runtime error

* update libIFI.fd hash

* IFI.F: some code cleanup and correctly handle spval

* compile_upp.sh: -B flag to compile IFI executables

* connect new library requirements to build system

* Jet module paths for ifi

* remove duplicate line

* add hera rt log

* add hercules rt log

* add orion rt log

* update author information in INITPOST_NETCDF.f

* gcc tests use same ubuntu version as intel

* gcc tests ubuntu 22.04

* explicitly specify gcc 11 hoping it will work

* set ubuntu 22.04 in another place

* revert accidental change

* update libIFI.fd hash

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@NeilBarton-NOAA @WenMeng-NOAA @gspetro-NOAA
new sfs output for global-workflow (NOAA-EMC#1066)
efedcd4 
* new sfs output for global-workflow

* updates for DSWRF for TOA

* add hercules rt log

* add orion rt log

* add hera rt log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@DavidBurrows-NCO @WenMeng-NOAA
Update module file after Gaea-C5 OS upgrade (NOAA-EMC#1070)
4e41404 
* update module file after Gaea-C5 OS upgrade

* update and split modulefiles for gaea c5 and c6 builds

* add c6 to detect_machine.sh

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
@jaymes-kenyon @WenMeng-NOAA @gspetro-NOAA
MPAS applications: fixes for absolute vorticity and surface latent-he…
30d4079 
…at flux (NOAA-EMC#1069)

* Check for SPVAL before interpolating wind onto mass points

* Initialize absolute vorticity as SPVAL, regardless of modelname

* Updated netCDF array name for surface latent-heat flux

* Initialize ABSV as zero for RAP/HRRR only

* Use the "submodelname" variable in the CALVOR subroutine

* add orion rt log

* add hercules rt log

* add hera RT log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@WenMeng-NOAA @gspetro-NOAA
Reduce the printouts for GEFS processing. (NOAA-EMC#1075)
54123f9 
* Reduce the printouts for GEFS processing.

* add hera rt log

* add orion rt log

---------

Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@hsinmulin-NOAA @gspetro-NOAA
Change gtg_algo inputs (MDLFLD.f) (NOAA-EMC#1076)
ce258fc 
* update gtg code revision

* Update INITPOST_NETCDF.f

add comments from rrfs_vi per difference

* Update INITPOST_NETCDF.f

reverse the comment change

* Add files via upload

Change inputs for gtg_algo from averaged (sfcshx, sfclhx) to instantaenous (twbs, qwbs)

* add hera rt log

* add hercules rt log

* add orion rt log

---------

Co-authored-by: hsin-mu lin <hsin-mu.lin@dlogin09.dogwood.wcoss2.ncep.noaa.gov>
Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@WenMeng-NOAA @gspetro-NOAA
Unify iSF_SURFACE_PHYSICS (NOAA-EMC#1080)
65a0339 
* Unify iSF_SURFACE_PHYSICS

* Remove redundant modelnames

* Tuning SURFCE.f

* add hera rt file

* add hercules rt log

* add orion rt log

---------

Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@DavidBurrows-NCO
correct spack-stack path (NOAA-EMC#1083)
f697316
@EricSinsky-NOAA @WenMeng-NOAA @gspetro-NOAA
Add max wind variables and AI/ML variables for GEFS (NOAA-EMC#1085)
ce5f3b1 
* Add max wind variables for GEFS

* Add max wind variables to GEFS instead of SFS

* Remove manual changes made to postxconfig-NT-gefs

* Automatically generate postxconfig-NT-gefs.txt

Given the changes in postcntrl_gefs.xml, the postxconfig-NT-gefs.txt file has been automatically generated with
make.

* Add more pressure levels to some variables

* Regenerated postxconfig-NT-gefs with more levels

* Add missing decimal point

* Regenerate postxconfig-NT-gefs with correction

* add hercules rt log

* add orion RT log

* add hera rt log

---------

Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: gspetro-NOAA <gillian.petro@noaa.gov>
@kayeekayee
adding upp hash ce5f3b1
3352cdb
@kayeekayee
Fix runtime error.
f78339b
@kayeekayee
Resolve PR conflicts
8dfef98
@jderrico-noaa jderrico-noaa merged commit c3af9aa into NOAA-GSL:global-workflow Mar 4, 2025
2 of 4 checks passed
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