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NOAA-OWP / DMOD Public

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Support for alternate data formats#276

Closed

robertbartel wants to merge 174 commits intoNOAA-OWP:masterNOAA-OWP/DMOD:masterfrom

robertbartel:i/post_agu22/2/alternate_data_formatsrobertbartel/DMOD:i/post_agu22/2/alternate_data_formatsCopy head branch name to clipboard

Conversation Commits174 (174)Checks Files changed

Closed

Support for alternate data formats#276
robertbartel wants to merge 174 commits intoNOAA-OWP:masterfrom
robertbartel:i/post_agu22/2/alternate_data_formats

Commits

Commits on Jan 18, 2023

Fix fast-debug in dataservice image entrypoint.
robertbartel
committed
Add package client name vars to example.env.
robertbartel
committed
Add new QueryType for dataset management messages.
robertbartel
committed
Add GET_SERIALIZED_FORM query dataservice support.
robertbartel
committed
Refactor ExternalRequestClient async_make_request.
robertbartel
committed
Adding client methods for data/metadata retrieval.
robertbartel
committed
Refactor dataset request handler to use try block.
robertbartel
committed
Add get_serialized_datasets to external client.
robertbartel
committed
Improve DatasetExternalClient.
robertbartel
committed
Bump dataservice dependencies.
robertbartel
committed
Fix LIST_FILES query response bug in dataservice.
robertbartel
committed
Update dataset manager abstract interface.
robertbartel
committed
More QueryType elements and update DatasetQuery.
robertbartel
committed
Update dataset message to support start and size.
robertbartel
committed
Bump requestservice dependencies.
robertbartel
committed
Bump requestservice to 0.6.0.
robertbartel
committed
Optimize object store dataset reloading.
robertbartel
committed
Update object store manager for interface changes.
robertbartel
committed
Update modeldata dependency versions.
robertbartel
committed
Update client unit tests for interface changes.
robertbartel
committed
Bump client package version to 0.2.0.
robertbartel
committed
Update dataservice response handling.
robertbartel
committed
Update dataservice package dependency versions.
robertbartel
committed
Add dataset view class and static page for GUI.
robertbartel
committed
Refactor static dir usage in DMODProxy.py.
robertbartel
committed
Add Django GUI url def for dataset view.
robertbartel
committed
Add client package build arg for GUI Docker build.
robertbartel
committed
Add second view and navigation.
robertbartel
committed
Have DatasetManagementView.py send DS as list.
robertbartel
committed
Update dataset management GUI with details view.
robertbartel
committed
Cleanup after changing implementation approach.
robertbartel
committed
Create AbstractDatasetView GUI Django view class.
robertbartel
committed
Add Django view for direct dataservice API calls.
robertbartel
committed
Add GUI Django url for Dataset API AJAX calls.
robertbartel
committed
Add commented-out helper debug volume for GUI.
robertbartel
committed
Refactor DatasetManagementView inheritance.
robertbartel
committed
More progress on dataset management template.
robertbartel
committed
Add dataset delete support to Django API view.
robertbartel
committed
Implement dataset delete in management view.
robertbartel
committed
Adding Javascript component helper classes.
robertbartel
committed
Update dataset API view.
robertbartel
committed
Update dataset management view template.
robertbartel
committed
Add incomplete DatasetFileWebsocketFilelike.
robertbartel
committed
Add generate_domain helper func to Hydrofabric.
robertbartel
committed
Add specialized geojson subset handler subclass.
robertbartel
committed
Update SubsetHandler unit tests for new type.
robertbartel
committed
Update subsetservice package dependencies.
robertbartel
committed
Let subset-srv Cli use GeoJsonBackedSubsetHandler.
robertbartel
committed
Add log and debug support to subset service main.
robertbartel
committed
Adjust subsetservice to multiple geojson handlers.
robertbartel
committed
Add subsetservice API to get geojson for bounds.
robertbartel
committed
Refactor and enhance DockerS3FSPluginHelper.
robertbartel
committed
Improve how dataservice indicates Docker is used.
robertbartel
committed
Add async func to manage hydrofabric datasets.
robertbartel
committed
Add async task for new hydrofabric manage func.
robertbartel
committed
Update/centralize some static GUI settings.
robertbartel
committed
Update request_client to support overwrite.
robertbartel
committed
Updates to MapView classes hydrofabric support.
robertbartel
committed
Updates to GUI crosswalk hydrofabric support.
robertbartel
committed
Use centralized static settings in DMODProxy.
robertbartel
committed
Updates to map.js for large hydrofabric support.
robertbartel
committed
Fix migration support in app_server entrypoint.
robertbartel
committed
Add debug support to subsetservice entrypoint.
robertbartel
committed
Work on GUI service docker config.
robertbartel
committed
Debug/hydrofabric in subsetservice Docker config.
robertbartel
committed
Fix silly blob/glob Path usage bug.
robertbartel
committed
Have Docker S3FS helper check for existing vols.
robertbartel
committed
Let Docker S3FS helper remove existing service.
robertbartel
committed
Let Docker S3FS helper sanity check vol better.
robertbartel
committed
Adjust/fix S3FS helper service management logic.
robertbartel
committed
Adjust S3FS helper use to remove existing service.
robertbartel
committed
Fix bug in obj store vol script for sentinel.
robertbartel
committed
Fix strange issue with DockerFile for vol helper.
robertbartel
committed
Fixes to get dataservice vol creation working.
robertbartel
committed
Fix GUI migration setting up user to strip spaces.
robertbartel
committed
Refactor GUI settings for special GUI directories.
robertbartel
committed
Adjust Django settings to avoid dev CSRF issues.
robertbartel
committed
Account for new hydrofabric dir setting in map.
robertbartel
committed
Undo zoom-based subset lookup logic in map.js.
robertbartel
committed
Fix map.js issue with newer hydrofabrics.
robertbartel
committed
Add/fix numpy as explicit GUI dependency.
robertbartel
committed
Address GUI stack config issues.
robertbartel
committed
Remove deprecated Forcing "path" GUI form field.
robertbartel
committed
Add "Resources" and "Requested CPUs" to GUI form.
robertbartel
committed
Change color scheme of GUI config form.
robertbartel
committed
Fix GUI template form input id bug.
robertbartel
committed
Add DATE_TIME_FORMAT to GUI settings.py.
robertbartel
committed
Update GUI migrations for specific formulations.
robertbartel
committed
Adjust ngen config form field ids for parsing.
robertbartel
committed
Updates to GUI ngen config form exec logic.
robertbartel
committed
Fixing bugs in init of members in DmodClient.
robertbartel
committed
Additional formulation record.
robertbartel
committed
Fix additional Formulation template description.
robertbartel
committed
Fix GUI migrations issue from upstream changes.
robertbartel
committed
Add minio Python package as dependency of GUI.
robertbartel
committed
Add several static GUI dir and minio settings.
robertbartel
committed
Update GUI Docker stack config for minio access.
robertbartel
committed
Update Dataset API view to cache and zip datasets.
robertbartel
committed
Add view and url for downloading zipped dataset.
robertbartel
committed
Update dataset_management.html for downloads.
robertbartel
committed
Update DatasetApiView function to download file.
robertbartel
committed
Add Django url and view to download dataset file.
robertbartel
committed
Fix dataset mgr Django template file downloads.
robertbartel
committed
Fix bug in GUI DatasetApiView for caching dataset.
robertbartel
committed
Comment out upload files to existing dataset.
robertbartel
committed
fix dynamic form field node removal in CreateDatasetForm

aaraney
authored and
robertbartel
committed
add django forms for DatasetManagementView.

aaraney
authored and
robertbartel
committed
add utility method to for retrieving dynamic form from enum using its name

aaraney
authored and
robertbartel
committed
move DatasetFormatForm to bottom of DatasetManagementForms mod to make python imports happy

aaraney
authored and
robertbartel
committed
date time field accepts partial ISO8061 format. this is a work around, should be changed once django version has been updated. #209 is tracking this

aaraney
authored and
robertbartel
committed
render forms in template

aaraney
authored and
robertbartel
committed
add dataset form css

aaraney
authored and
robertbartel
committed
add custom id and class to form fields

aaraney
authored and
robertbartel
committed
wire-up labels in template and add comments about how form input's and label's interact

aaraney
authored and
robertbartel
committed
add dynamic form mix in. sets custom id, class, and style to form fields

aaraney
authored and
robertbartel
committed
hide dynamic form labels by default

aaraney
authored and
robertbartel
committed
disable all dynamic fields by default. fields must be disabled to submit when display is set to none

aaraney
authored and
robertbartel
committed
add onchange for toggling on / off dynamic form fields

aaraney
authored and
robertbartel
committed
render form and dynamic forms in DatasetManagementView

aaraney
authored and
robertbartel
committed
add trailing colon to labels

aaraney
authored and
robertbartel
committed
forgot to instantiate some form fields

aaraney
authored and
robertbartel
committed
add slight gap between items

aaraney
authored and
robertbartel
committed
add default noop data format choice

aaraney
authored and
robertbartel
committed
add file upload form field

aaraney
authored and
robertbartel
committed
add filename validation, cannot include '_'. Minio does not allow '_'

aaraney
authored and
robertbartel
committed
update file fields' to use input validation

aaraney
authored and
robertbartel
committed
add js utility module

aaraney
authored and
robertbartel
committed
add start time end time field validation

aaraney
authored and
robertbartel
committed
Move minio client factory to AbstractDatasetView.
robertbartel
committed
Cleanup refactor of DatasetApiView.py.
robertbartel
committed
Fix create form in dataset_management.html.
robertbartel
committed
Adjust Django form for dataset create.
robertbartel
committed
Ensure GUI app_server image installs dmod-core.
robertbartel
committed
Update dataset mgr view with full create support.
robertbartel
committed
Workaround for CSRF issues.
robertbartel
committed
Fix issue with underscore in dataset file names.
robertbartel
committed
Fix dataset upload issue for larger files.
robertbartel
committed
Fix nginx config issue for uploading larger files.
robertbartel
committed
Fix bug w/ converting time format from GUI input.
robertbartel
committed
Add OS dependency geos-dev to py-deps image.
robertbartel
committed
Enhance deserialization of NGENRequest.
robertbartel
committed
Add calibration request messages.
robertbartel
committed
Add new types to communication package __init__.
robertbartel
committed
Fix init of existing request handlers.
robertbartel
committed
Fix tests for request handler init updates.
robertbartel
committed
Bug in request handler service_client lazy init.
robertbartel
committed
Add new NgenCalibrationRequestHandler class.
robertbartel
committed
Add means for type-specific handler preprocessing.
robertbartel
committed
Update requestservice internal deps versions.
robertbartel
committed
Update requestservice for changes to handler init.
robertbartel
committed
resolve external requests init conflict

aaraney
authored and
robertbartel
committed
resolve request message import conflict in request service

aaraney
authored and
robertbartel
committed
fix merge conflict

aaraney
authored and
robertbartel
committed
add ngen-calibration dockerfile and entrypoint

aaraney
authored and
robertbartel
committed
recursively search for available model subclasses

aaraney
authored and
robertbartel
committed
add ngen-cal model_name to NgenCalibrationRequest type

aaraney
authored and
robertbartel
committed
deserialize NgenCalibrationRequest evaluation_time_range

aaraney
authored and
robertbartel
committed
fix NgenCalibrationResponse subclass type.

aaraney
authored and
robertbartel
committed
add missing await.

aaraney
authored and
robertbartel
committed
add support for ngen calibration jobs in scheduler

aaraney
authored and
robertbartel
committed
dont add data to datasets as temporary. causes s3 Bucket is missing ObjectLockConfiguration error

aaraney
authored and
robertbartel
committed
NOTE: MAY REMOVE LATER. Hard coded dmod.client code for submitting ngen calibration jobs

aaraney
authored and
robertbartel
committed
Fix bug with duplicate kwargs for NGENRequest.
robertbartel
committed
Fix hydrofab subset test for abstraction change.
robertbartel
committed

Commits on Jan 20, 2023

Fix request service arg handling of eval details.
robertbartel
committed
Add eval ENV vars to request-service def.
robertbartel
committed
Update requestservice entrypoint w/ eval settings.
robertbartel
committed
Fix bugs/spacing in request srv handler for eval.
robertbartel
committed
Bump request-service package version.
robertbartel
committed

Commits on Jan 31, 2023

Add can_format_fulfill func; update contains func.
robertbartel
committed
Bump dmod.core version to 0.5.0.
robertbartel
committed
Update dataservice dependency on dmod.core.
robertbartel
committed
Update dataservice logic for alternative formats.
robertbartel
committed
Bump dataservice version to 0.5.0.
robertbartel
committed

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