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Spectral library generation fails with scikit-learn 1.8.0

Status: Open.

#2669 In Nesvilab/FragPipe;

· caleb-lindgren opened on Feb 16, 2026

FragPipe-SpecLib installation

Status: Open.

#2668 In Nesvilab/FragPipe;

· MartaEspinosa opened on Feb 16, 2026

FragReporter error

Status: Open.

#2663 In Nesvilab/FragPipe;

· iorera opened on Feb 10, 2026

SpecLib Problem w/ FP24

Status: Open.

#2649 In Nesvilab/FragPipe;

· jjGG opened on Jan 27, 2026

Export matched fragments (and batch spectra export) not reporting c- and z-ions

Status: Open.

#2647 In Nesvilab/FragPipe;

· iahendriks opened on Jan 26, 2026

SILAC-TMT hyperplex

Status: Open.

#2625 In Nesvilab/FragPipe;

· JohnSuberu opened on Jan 16, 2026

write sub-mzml files for timstof data

Status: Open.

#2592 In Nesvilab/FragPipe;

· jd690764 opened on Dec 12, 2025

PTM Assignment in Combined Peptide Results

Status: Open.

#2584 In Nesvilab/FragPipe;

· KZ-MS opened on Dec 8, 2025

FileNotFoundError: [Errno 2] No such file or directory - diatracer.psmpkl missing

Status: Open.

#2582 In Nesvilab/FragPipe;

· Althalis opened on Dec 8, 2025

Metadata-aware MBR

Status: Open.

#2564 In Nesvilab/FragPipe;

· leonardblaschek opened on Nov 25, 2025

example output data

Status: Open.

#2551 In Nesvilab/FragPipe;

· mffrank opened on Nov 20, 2025

Metaproteomics module test execution problem

Status: Open.

#2541 In Nesvilab/FragPipe;

· MiguelCos opened on Nov 13, 2025