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OleksiiDubovyk/ancends
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Package: ancends
Type: Package
Title: Simple Analysis of Community Structure
Version: 0.1.3
Author: Oleksii Dubovyk
Maintainer: Oleksii Dubovyk <oadubovyk@gmail.com>
Description: This package allows to calculate basic diversity indices and calculate paired indices of structure similarity and species similarity between communities.
Diversity indices available are Simpson index, Shannon index, Buzas & Gibson Evenness, Brillouin index, Menhinick index, Margalef index and Equitability value.
Presence-absence similarity indices available are Jaccard index, Sorensen index, Kulczinsky index, Ochiai index, Szymkiewich & Simpson or Dice association index, Braun-Blanquet index, Baroni-Urbani & Buser index and Mountford index.
Structural similarity indices available are modified logarithmic Sorensen index, Renkonen index, Bray & Curtis index, Canberra metric, Squared Euclidian distance, Morisita index.
Also data transformation algorithm is developed. It provides paired comparisons between communities (with Jaccard, Sorensen, Bray-Curtis and other similarity indices) and between factors.
License: GPL-3
Encoding: UTF-8
LazyData: true
Suggests: knitr,
rmarkdown
VignetteBuilder: knitr
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