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Merged
JanssenBrm merged 4 commits into from
Feb 11, 2026
Merged

Unavilable notebooks #129

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6662c2b
removed widgets from metadata
Pratichhya Feb 3, 2026
eb29cad
removed widgets info from metadata
Pratichhya Feb 3, 2026
3dde7f8
updated widgets
Pratichhya Feb 3, 2026
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linting
Pratichhya Feb 3, 2026
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404 changes: 21 additions & 383 deletions notebooks/OpenEO/FuseTS - CropSAR Full Workflow.ipynb
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442 changes: 46 additions & 396 deletions notebooks/OpenEO/FuseTS - MOGPR Full Workflow.ipynb
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513 changes: 76 additions & 437 deletions notebooks/OpenEO/FuseTS - MOGPR Multi Source Fusion.ipynb
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471 changes: 57 additions & 414 deletions notebooks/OpenEO/FuseTS - MOGPR S1 and S2.ipynb
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12 changes: 7 additions & 5 deletions src/fusets/openeo/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -72,16 +72,18 @@ def load_xarray(collection_id, spatial_extent, temporal_extent, properties=None,
if openeo_connection == None:
openeo_connection = openeo.connect("openeo.cloud").authenticate_oidc()
print(spatial_extent)
scl = openeo_connection.load_collection(
collection_id, temporal_extent=temporal_extent, bands=["SCL"]
).filter_bbox(spatial_extent)
scl = openeo_connection.load_collection(collection_id, temporal_extent=temporal_extent, bands=["SCL"]).filter_bbox(
spatial_extent
)
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
data = openeo_connection.load_collection(
collection_id, temporal_extent=temporal_extent, bands=["B02", "B03", "B04"]
).filter_bbox(spatial_extent)
Expand Down
10 changes: 5 additions & 5 deletions src/fusets/openeo/services/publish_mogpr.py
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Original file line number Diff line number Diff line change
Expand Up @@ -29,16 +29,16 @@ def execute_udf():
temp_ext = ["2023-01-01", "2023-03-31"]

# Setup NDVI cube
scl = connection.load_collection(
"SENTINEL2_L2A", spatial_extent=spat_ext, temporal_extent=temp_ext, bands=["SCL"]
)
scl = connection.load_collection("SENTINEL2_L2A", spatial_extent=spat_ext, temporal_extent=temp_ext, bands=["SCL"])
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
base_s2 = connection.load_collection(
"SENTINEL2_L2A", spatial_extent=spat_ext, temporal_extent=temp_ext, bands=["B04", "B08"]
)
Expand Down
16 changes: 9 additions & 7 deletions src/fusets/openeo/services/publish_mogpr_s1_s2.py
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Original file line number Diff line number Diff line change
Expand Up @@ -151,16 +151,16 @@ def _load_ndvi(connection, polygon, date):
:param date:
:return:
"""
scl = connection.load_collection(
"SENTINEL2_L2A", spatial_extent=polygon, temporal_extent=date, bands=["SCL"]
)
scl = connection.load_collection("SENTINEL2_L2A", spatial_extent=polygon, temporal_extent=date, bands=["SCL"])
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
base_s2 = connection.load_collection(
"SENTINEL2_L2A", spatial_extent=polygon, temporal_extent=date, bands=["B04", "B08"]
)
Expand Down Expand Up @@ -201,10 +201,12 @@ def _load_evi(connection, polygon, date):
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
base_s2 = connection.load_collection(
collection_id="SENTINEL2_L2A",
spatial_extent=polygon,
Expand Down
6 changes: 4 additions & 2 deletions src/fusets/openeo/services/publish_phenology.py
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Original file line number Diff line number Diff line change
Expand Up @@ -56,10 +56,12 @@ def test_udf():
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
base = connection.load_collection(
"SENTINEL2_L2A_SENTINELHUB", spatial_extent=spat_ext, temporal_extent=temp_ext, bands=["B04", "B08"]
)
Expand Down
6 changes: 4 additions & 2 deletions tests/conftest.py
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Original file line number Diff line number Diff line change
Expand Up @@ -118,10 +118,12 @@ def wetland_sentinel2_ndvi(areas):
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
data = openeo_connection.load_collection(
"SENTINEL2_L2A", temporal_extent=("2020-01-01", "2021-01-01"), bands=["B08", "B04"]
).filter_bbox(areas["wetland"])
Expand Down
6 changes: 4 additions & 2 deletions tests/fusets_openeo_tests/test_performance.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,10 +50,12 @@ def start_job(data, context: dict, **kwargs) -> openeo.BatchJob:
cloud_mask = scl.process(
"to_scl_dilation_mask",
data=scl,
kernel1_size=17, kernel2_size=77,
kernel1_size=17,
kernel2_size=77,
mask1_values=[2, 4, 5, 6, 7],
mask2_values=[3, 8, 9, 10, 11],
erosion_kernel_size=3)
erosion_kernel_size=3,
)
base = connection.load_collection(
"SENTINEL2_L2A",
spatial_extent=aoi,
Expand Down
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