PMBio · bfclarke · Jun 16, 2025 · May 27, 2025 · May 27, 2025 · May 27, 2025
diff --git a/deeprvat/annotations/annotations.py b/deeprvat/annotations/annotations.py
@@ -653,7 +653,7 @@ def filter_annotations_by_exon_distance(
     logger.info("adding exons to annotations (1:M merge)")
 
     merged = anno_df.merge(gtf, how="left", on="gene_id")
-    del anno_df
+    del anno_df, gtf
 
     logger.info(
         "adding positons of start and end of each exon relative to variant position to df"

diff --git a/...by_exon_distance/filter_by_exon_distance_filteroutall/input/gencode.v44.annotation.gtf.gz b/...by_exon_distance/filter_by_exon_distance_filteroutall/input/gencode.v44.annotation.gtf.gz
diff --git a/..._by_exon_distance/filter_by_exon_distance_filteroutall/input/protein_coding_genes.parquet b/..._by_exon_distance/filter_by_exon_distance_filteroutall/input/protein_coding_genes.parquet
diff --git a/...filter_by_exon_distance/filter_by_exon_distance_small/input/gencode.v44.annotation.gtf.gz b/...filter_by_exon_distance/filter_by_exon_distance_small/input/gencode.v44.annotation.gtf.gz
diff --git a/.../filter_by_exon_distance/filter_by_exon_distance_small/input/protein_coding_genes.parquet b/.../filter_by_exon_distance/filter_by_exon_distance_small/input/protein_coding_genes.parquet