Feature/model centered#1151

Merged

Jammy2211 merged 56 commits intofeature/jax_wrapperfrom

feature/model_centered

Jun 24, 2025

Commits on Jun 19, 2025

switchign use jax to config enables tests to pass

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Commits on Jun 20, 2025

simplify use jax import and make jax requirmeent

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disable warning when jax is used

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simplify factor jax use

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simplify jacobians

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move more jax imports

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fix pool and erfinv imports for cleaner JAX support

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all unit tests pass due to JAX fixes

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docstring of normal message complete

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beta.py docstringed

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GaussianPrior updated

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removed lower_limit and upper_limit from GaussianPrior

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remove lower_limit from all messages

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remove limits from test_limits

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remove all use of PriorLimitException

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remove assert_within_limits

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remove ignore_prior_limits

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limits removed rom mapping

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cleaning up some tests

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more removal of stuff trying to ix unit tests

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remove limits from more priors

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identifier tests pass

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aggregator tests pass

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remove lower limits of gaussians from more unit test sertup

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reinstate __database_args__ in UniformPrior and LogUniformPrior

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remove tests on gaussiaPrior limits being copied

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fix random prior test

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add dict to UniformPrior and LogUniformPRior fixint tests lost via inherritance

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all prior tests pass

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Commits on Jun 23, 2025

fix non linear test regression by putting assertion skip back in

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readd limits to priors for prior passing

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fix mapper model test regression

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pytest test_autofit/mapper/model/test_model_mapper.py

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fix test_autofit/mapper/functionality/test_take_attributes.py

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test_autofit/jax/test_pytrees.py

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fix test_autofit/graphical/test_unification.py

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fix test_autofit/graphical/stochastic/test_regression.py

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test_autofit/graphical/regression/test_identifier.py

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fixtest_autofit/graphical/global/test_hierarchical.py

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test_autofit/graphical/gaussian/test_other_priors.py

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test_autofit/database/identifier/test_identifiers.py

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fix pytest test_autofit/aggregator/test_reference.py

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TruncatedNormal setup

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value for on truncated gaussian

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TruncatedGaussianPrior full implemented, removes assert within limits for JAX

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gaussian liimts -> limits

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Merge branch 'main' into feature/truncated_gaussian

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integration tests pass

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model absolute -> model centred absolute

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model relative -> model centred relative

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model_bounded -> model_centred_max_lh_bounded

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default prior passing now just reuses original prior

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fix test_autofit/non_linear/search/test_abstract_search.py

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fix test_autofit/non_linear/result/test_result.py

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fix test_autofit/mapper/functionality/test_by_path.py

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fix

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