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PyProphet / pyprophet Public

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[UPDATE] export parquet, include score tables into export if present#170

Merged

singjc merged 18 commits intoPyProphet:masterPyProphet/pyprophet:masterfrom

singjc:mastersingjc/pyprophet:masterCopy head branch name to clipboard

Oct 29, 2025

Conversation Commits18 (18)Checks Files changed

Merged

[UPDATE] export parquet, include score tables into export if present#170
singjc merged 18 commits intoPyProphet:masterfrom
singjc:master

Commits

Commits on Oct 29, 2025

Initial plan
Copilot
committed
Initial exploration of pyprophet export parquet code

Copilot
and
singjc
committed
Add support for SCORE_ tables and include_transition_data flag in parquet export

Copilot
and
singjc
committed
Refactor: extract helper method to reduce code duplication

Copilot
and
singjc
committed
Fix comment to match code behavior
Copilot
committed
Fix Python 3.9 compatibility: use Tuple instead of tuple for type hints

Copilot
and
singjc
committed
Fix: filter out columns without types when building temp table schema

Copilot
and
singjc
committed
Fix: add RUN_ID to score peptide/protein views for proper joining

Copilot
and
singjc
committed
Fix: use LEFT JOIN for score views to avoid filtering out rows without matching RUN_ID

Copilot
and
singjc
committed
Add tests for parquet export with SCORE_ tables and include_transition_data flag

Copilot
and
singjc
committed
update: regtest for new test
singjc
committed
fix tests
singjc
committed
Merge pull request #3 from singjc/copilot/update-export-parquet-method
singjc
authored
Initial plan
Copilot
committed
Add SCORE_IPF table to OSW parquet export

Copilot
and
singjc
committed
Add test for SCORE_IPF columns in parquet export

Copilot
and
singjc
committed
add: regtest output
singjc
committed
Merge pull request #4 from singjc/copilot/fix-osw-export-score-ipf-table
singjc
authored

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