Simplify _Q_opt in parmest with block scenario structure.

[sscini]

Fixes # .

Summary/Motivation:

_Q_opt, the main model building and solving function within parmest, is still heavily dependent on MSISPPY, and the code is becoming outdated and difficult to interpret. The goal of this PR is to redesign _Q_opt to work without this dependence, retaining all the current functionality

Changes proposed in this PR:

-_Q_opt redesign, using a block structure, with minimal changes needed to functions that utilize it.

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[sscini]

@djlaky @adowling2 Here are my initial thoughts on the redesign. Please provide feedback on code layout to this point.

[sscini]

Dan and I had a good conversation today about the functional things needed in the redesign, and how to go about adding components to the overall block and sub-models. Working to implement changes, closely related to what is done currently in doe's _generate_scenario_blocks.

[adowling2]

Nice progress

[sscini]

@adowling2 @djlaky Added case for bootstrap, now works with theta_est, theta_est_bootstrap, and theta_est_leaveNout if I replace _Q_opt with _Q_opt_blocks. Please review.

I am aware of the duplicated code, but when I attempted to unify them using n_scenarios = len(self.exp_list) or len(bootlist), I am getting an error for bootstrap I am still working out.

Would we want to fully transition to using theta_est for obj and theta, and cov_est for covariance and add an error/warning? Or should I make it work to calculate cov if calc_cov=True?

Thanks!

[codecov]

Codecov Report

❌ Patch coverage is 4.76190% with 100 lines in your changes missing coverage. Please review.
✅ Project coverage is 89.31%. Comparing base (13facca) to head (d91ce3f).
⚠️ Report is 11 commits behind head on main.

Files with missing lines	Patch %	Lines
pyomo/contrib/parmest/parmest.py	4.76%	100 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3789      +/-   ##
==========================================
- Coverage   89.40%   89.31%   -0.10%     
==========================================
  Files         909      909              
  Lines      105541   105646     +105     
==========================================
- Hits        94364    94360       -4     
- Misses      11177    11286     +109     

Flag	Coverage Δ
builders	29.07% <4.76%> (-0.04%)	⬇️
default	85.94% <4.76%> (?)
expensive	35.73% <4.76%> (?)
linux	86.63% <4.76%> (-2.55%)	⬇️
linux_other	86.63% <4.76%> (-0.10%)	⬇️
osx	82.78% <4.76%> (-0.09%)	⬇️
win	84.88% <4.76%> (-0.09%)	⬇️
win_other	84.88% <4.76%> (-0.09%)	⬇️

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