omopcat 0.3.0

What's Changed

• Keep the concepts table at a minimum height (@milanmlft #114)
• Use better low-frequency replacement values (@milanmlft #115)
• Improved docker build speed and caching (@stefpiatek #118)
• Removed auto-selection of first row in the concepts table (@DW10 #120)
• Keep the value_as_concept_id column in the summary stats table (@milanmlft #122)
• Keep rows selected when date range changes (@milanmlft #123)

New Contributors

• @DW10 made their first contribution in #120

Full Changelog: v0.2.2...v0.3.0

omopcat 0.2.2

Refactoring the deployment setup and reorganise the repo (@milanmlft in #108).
The preprocessing functionality now lives in a separate omopcat.preprocessing
package in the preprocessing/ directory of the repo. While the app was moved to
app/. Both have their own Docker containers so they can be run independently
from each other.

New features

• Move low-frequency replacement to pre-processing (@milanmlft in #109)
• Remove no matching concept instances (@milanmlft in #110)
• Enable public version of app with courser data (@milanmlft in #111)

Fixes

• Remove duplicate stats with warning (@milanmlft in #107)

Full Changelog: v0.2.1...v0.2.2

omopcat 0.2.1

Updating GAE deployment with full Epic extract for October 2024.

New features

• Added button to add selected concepts to export (@milanmlft, #104)

Misc

• Add simple CI to check docker build (@milanmlft, #89)
• Updates to generate production data on GAE (@milanmlft in #87)
• Various UI improvements (@milanmlft in #88)
• docs: Rename repo omop-data-catalogue -> omopcat (@milanmlft in #98)
• test: Improve app-level tests and increase coverage (@milanmlft in #103)

Full Changelog: v0.2.0...v0.2.1

omopcat 0.2.0

This version adds support for OMOP bundles. The app name also changed from calypso to omopcat.

Major changes

• Changed app name from calypso to omopcat (@milanmlft, #64)
• Various updates to the export tab (@tim-band & @milanmlft, #62, #67)
• Added dropdown menu to select bundles (@BaptisteBR, #72)
• Updated dev and test data with concepts for which we have bundle information (@milanmlft, #74)
• The concepts table overview now always shows all available concepts (@milanmlft, #80)
• The concepts table now also shows the number of patients and records for each concept(@andysouth, #67)
• Added a new tab to display bundles (@milanmlft, #78)
• Added support for visualising multiple concepts simultaneously (@milanmlft, #81)
• Add a new tab with user manual (@andysouth & @milanmlft, #71)

Minor changes and bug fixes

• Set up code coverage checking (@milanmlft, #66)
• Set up pre-commit (@milanmlft, #68)
• Refactored the plots module (@milanmlft, #77)
• Set default ggplot2 theme with larger font size (@milanmlft, #82)

Full Changelog: v0.1.0...v0.2.0

omopcat 0.1.0

The minimal data catalogue.

• Implemented prototype (#3)
• Added preprocessing script to calculate summary statistics (#22)
• Made dashboard reactive to concept selection and date range filtering (#31, #37)
• Added handling of categorical concepts (#32)
• Added setup and use of realistic test data (#24)
• Set up deployment environment (#44, #45)
• Added masking of low-frequency statistics (#51)