Add test suite, CI/CD pipeline, and PyPI packaging infrastructure by Copilot · Pull Request #13 · SBFRF/pyDIWASP

Copilot · 2026-02-03T01:33:44Z

CI/CD Pipeline and Test Infrastructure Setup - COMPLETE ✅

🎉 Final Implementation - All Inline Comments Addressed

All code review feedback and inline comments have been addressed:

✅ Latest Change (this commit)

Codecov token: Added token: ${{ secrets.CODECOV_TOKEN }} parameter to CI workflow

✅ Previous Changes

Unused variables: All renamed to _ to indicate intentionally unused
Workflow handling: Added continue-on-error: true to Test PyPI step
Import fixes: Fixed missing imports (io, os, redirect_stdout) in test files
Package structure: Fixed setup.py to use py_modules + packages
Test imports: Removed all sys.path hacks, tests use proper imports

All 28 tests passing. All inline comments addressed. Ready for merge!

Original prompt

This section details on the original issue you should resolve

<issue_title>Great CICD pipeline and deploy to pypi</issue_title>
<issue_description></issue_description>

<agent_instructions>create test features and a CI pipeline to document existing capability </agent_instructions>

Comments on the Issue (you are @copilot in this section)

Fixes Great CICD pipeline and deploy to pypi #11

✨ Let Copilot coding agent set things up for you — coding agent works faster and does higher quality work when set up for your repo.

Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

…tion Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

…ompatibility Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Copilot

Pull request overview

This PR adds comprehensive testing infrastructure, CI/CD pipelines, and PyPI packaging configuration to the pyDIWASP project. The changes document existing functionality without modifying the core codebase, establishing a foundation for automated quality assurance and future deployment.

Changes:

Added 25 tests across 3 test modules covering core functions, API operations, and end-to-end workflows
Implemented GitHub Actions workflows for CI testing (Python 3.8-3.12) and PyPI publishing
Created package configuration (setup.py, requirements.txt, pytest.ini) for distribution

Reviewed changes

Copilot reviewed 13 out of 15 changed files in this pull request and generated 16 comments.

Show a summary per file

File	Description
tests/init.py	Initializes test package with documentation
tests/test_core.py	Tests for core functions (wavenumber, hsig, validation, transfer functions)
tests/test_api.py	Tests for API functions (infospec, interpspec, writespec)
tests/test_integration.py	End-to-end integration tests for dirspec with IMLM and EMEP methods
setup.py	PyPI package configuration with metadata and dependencies
requirements.txt	Runtime dependencies with version constraints
pytest.ini	Test configuration and coverage settings
.gitignore	Standard Python exclusions for build artifacts and caches
.github/workflows/ci.yml	CI workflow for automated testing and linting across Python versions
.github/workflows/publish.yml	PyPI publishing workflow triggered by releases
.github/workflows/README.md	Documentation for CI/CD workflows
README.md	Added installation instructions, testing section, and CI badge
TESTING.md	Comprehensive test suite documentation and workflow descriptions
CONTRIBUTING.md	Developer guidelines for testing and contributions
CHANGES_SUMMARY.md	Detailed summary of all changes in this PR

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.

TESTING.md

CHANGES_SUMMARY.md

tests/test_integration.py

setup.py

Copilot · 2026-02-03T01:58:40Z

tests/test_core.py

+        # Create a simple spectral matrix
+        freqs = np.linspace(0.05, 0.5, 10)
+        dirs = np.linspace(-np.pi, np.pi, 36)
+        df = freqs[1] - freqs[0]


Variable df is not used.

Suggested change

df = freqs[1] - freqs[0]

aaply fix as
_ = freqs[1] - freqs[0]

Applied in commit e83a061. Changed df to _.

Copilot · 2026-02-03T01:58:41Z

tests/test_core.py

+        freqs = np.linspace(0.05, 0.5, 10)
+        dirs = np.linspace(-np.pi, np.pi, 36)
+        df = freqs[1] - freqs[0]
+        ddir = dirs[1] - dirs[0]


Variable ddir is not used.

implement as _ = dirs[1] - dirs[0]

Applied in commit e83a061. Changed ddir to _.

Copilot · 2026-02-03T01:58:41Z

tests/test_integration.py

+        try:
+            stdout_f = io.StringIO()
+            with redirect_stdout(stdout_f):
+                SMout, EPout = dirspec(


Variable SMout is not used.

Suggested change

SMout, EPout = dirspec(

_SMout, EPout = dirspec(

implement as
_, EPout = dirspec(

Applied in commit e83a061. Changed to _, _ = dirspec( since both variables are unused.

Copilot · 2026-02-03T01:58:41Z

tests/test_integration.py

+        try:
+            stdout_f = io.StringIO()
+            with redirect_stdout(stdout_f):
+                SMout, EPout = dirspec(


Variable EPout is not used.

implement as
_, _ = dirspec(

Applied in commit e83a061. Changed to _, _ = dirspec( as requested.

tests/test_integration.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

SBFRF · 2026-02-03T02:24:32Z

tests/test_api.py

+        peak_f_idx = np.argmin(np.abs(freqs - 0.1))
+        peak_d_idx = np.argmin(np.abs(dirs - 0.0))


apply as
_ = np.argmin(np.abs(freqs - 0.1))

SBFRF · 2026-02-03T02:24:53Z

tests/test_api.py

+        # Create a peaked spectrum at 0.1 Hz and 0 degrees
+        S = np.zeros((len(freqs), len(dirs)))
+        peak_f_idx = np.argmin(np.abs(freqs - 0.1))
+        peak_d_idx = np.argmin(np.abs(dirs - 0.0))


apply as
_ = np.argmin(np.abs(dirs - 0.0))

SBFRF · 2026-02-03T02:25:21Z

tests/test_core.py

+        # Create a simple spectral matrix
+        freqs = np.linspace(0.05, 0.5, 10)
+        dirs = np.linspace(-np.pi, np.pi, 36)
+        df = freqs[1] - freqs[0]


aaply fix as
_ = freqs[1] - freqs[0]

…inue-on-error - Renamed unused variables to _ in test_api.py (peak_f_idx, peak_d_idx) - Renamed unused variables to _ in test_core.py (df, ddir) - Renamed unused variables to _ in test_integration.py (SMout, EPout) - Added continue-on-error to Test PyPI upload step in publish.yml - Fixed missing imports (io, os, redirect_stdout) in test files - Removed duplicate local imports in test files Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

SBFRF

address inline comments

- Added token parameter to Codecov upload step as required by v4 - Addresses final inline comment from code review - Workflow will use CODECOV_TOKEN secret if configured Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Copilot · 2026-02-03T02:37:44Z

address inline comments

Addressed in commit 94ce668. Added the token parameter to the Codecov upload step in the CI workflow. All inline comments from the code review have now been resolved.

Initial plan

a134b9c

Copilot AI assigned Copilot and SBFRF Feb 3, 2026

Copilot started work on behalf of SBFRF February 3, 2026 01:34 View session

Copilot AI and others added 6 commits February 3, 2026 01:34

Initial plan for CI/CD and test infrastructure

32b4373

Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Add test suite and package configuration

1391076

Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Add GitHub Actions CI/CD pipelines and documentation

e8edf1c

Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Add comprehensive documentation for testing and contributing

7079235

Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Add comprehensive summary of CI/CD and test infrastructure implementa…

282026e

…tion Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Address code review feedback: update version constraints and Python c…

3326313

…ompatibility Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Copilot AI changed the title ~~[WIP] Add CI pipeline and test features for PyPI deployment~~ Add test suite, CI/CD pipeline, and PyPI packaging infrastructure Feb 3, 2026

Copilot AI requested a review from SBFRF February 3, 2026 01:46

Copilot finished work on behalf of SBFRF February 3, 2026 01:46

SBFRF requested a review from Copilot February 3, 2026 01:50

Copilot started reviewing on behalf of SBFRF February 3, 2026 01:51 View session

Copilot AI reviewed Feb 3, 2026

View reviewed changes

SBFRF and others added 4 commits February 2, 2026 21:18

Update TESTING.md

4bb8c60

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Update tests/test_integration.py

56d4e9f

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Update CHANGES_SUMMARY.md

7ad8536

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Update setup.py

3e6ebac

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Copilot started work on behalf of SBFRF February 3, 2026 02:21 View session

SBFRF and others added 3 commits February 2, 2026 21:21

Update tests/test_core.py

b0b26b5

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Update tests/test_integration.py

3025402

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Apply suggestion from @Copilot

0d59951

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

SBFRF requested changes Feb 3, 2026

View reviewed changes

SBFRF marked this pull request as ready for review February 3, 2026 02:28

Copilot AI requested a review from SBFRF February 3, 2026 02:29

Copilot started work on behalf of SBFRF February 3, 2026 02:29 View session

Merge branch 'master' into copilot/create-ci-pipeline-for-pypi

0cd5287

Copilot finished work on behalf of SBFRF February 3, 2026 02:33

SBFRF requested changes Feb 3, 2026

View reviewed changes

Copilot started work on behalf of SBFRF February 3, 2026 02:35 View session

Add CODECOV_TOKEN parameter to CI workflow

94ce668

- Added token parameter to Codecov upload step as required by v4 - Addresses final inline comment from code review - Workflow will use CODECOV_TOKEN secret if configured Co-authored-by: SBFRF <8375832+SBFRF@users.noreply.github.com>

Copilot AI requested a review from SBFRF February 3, 2026 02:38

Copilot finished work on behalf of SBFRF February 3, 2026 02:38

SBFRF approved these changes Feb 3, 2026

View reviewed changes

Merge branch 'master' into copilot/create-ci-pipeline-for-pypi

96aeafd

SBFRF merged commit 474aebe into master Feb 3, 2026
5 checks passed

SBFRF deleted the copilot/create-ci-pipeline-for-pypi branch February 3, 2026 02:47

		peak_f_idx = np.argmin(np.abs(freqs - 0.1))
		peak_d_idx = np.argmin(np.abs(dirs - 0.0))

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CI/CD Pipeline and Test Infrastructure Setup - COMPLETE ✅

🎉 Final Implementation - All Inline Comments Addressed

✅ Latest Change (this commit)

✅ Previous Changes

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