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1. qpx qpx Public

   Forked from bigbio/qpx

   The proteomics quantification format, extending mzTab for large scale datasets.

   Python

2. quantms quantms Public

   Forked from bigbio/quantms

   Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

   Nextflow

3. mokume mokume Public

   Forked from bigbio/mokume

   Integrated library to perform feature normalization and multiple abundance computing based on qpx

   Python

4. quantmsdiann quantmsdiann Public

   Forked from bigbio/quantmsdiann

   quantms workflow for DIANN tool including DIA and DDA analysis

   Nextflow

5. pridepy pridepy Public

   Forked from PRIDE-Archive/pridepy

   Python client for PRIDE Archive Rest API.

   Python

6. nf-modules nf-modules Public

   Forked from bigbio/nf-modules

   quantms and other bigbio workflows modules in nf-core, nextflow standards

   Nextflow