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Fix simplicial set embedding bug
Add logging
Code cleanup
`func_mode` -> `get_mode`
New argument `jac_threshold_type`
Factor out `prune_global`
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Description
In this PR:
knn,ef_query,hnsw_param_ef_construction,hnsw_param_m,n_threads,x_data,distance_clusteras parameters tomake_knn_structtoo_bigandbig_clusteref_querywas the right size