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3 changes: 1 addition & 2 deletions .github/workflows/run-tests.yml
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Expand Up @@ -17,6 +17,5 @@ jobs:
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install pytest
- name: Run tests
run: pytest
run: make test
97 changes: 97 additions & 0 deletions CLAUDE.md
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# CLAUDE.md

This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.

## Project Overview

This is a PySpark-based custom dataset creation system for Torus that processes xAPI event data from AWS S3 and generates datasets in CSV or Datashop XML format. It runs on AWS EMR Serverless and processes educational analytics data.

## Key Commands

### Testing
```bash
# Run specific test file
python -m unittest tests.test_utils
python -m unittest tests.test_datashop
python -m unittest tests.test_hints

# Run all tests in tests directory
python -m unittest discover tests
```

### Docker Image Management
```bash
# Update custom EMR Docker image with dependencies
cd config
./update_image.sh
```

## Architecture

### Core Components

1. **Entry Point**: `job.py` - Main PySpark job that parses arguments and routes to appropriate processing function
- Handles two main actions: 'datashop' (XML format) or other event types (CSV format)
- Configures context with bucket names, section IDs, page IDs, and processing parameters

2. **Processing Pipeline**:
- **dataset/dataset.py**: Contains `generate_dataset()` and `generate_datashop()` functions
- Initializes Spark context and S3 client
- Retrieves keys from S3 inventory based on section IDs
- Processes data in chunks for memory efficiency
- For Datashop: Groups and sorts part attempts by user/session before XML conversion

- **dataset/keys.py**: Handles S3 inventory operations to list relevant data files

- **dataset/datashop.py**: Datashop XML format processing
- `process_jsonl_file()`: Processes individual JSONL files
- `process_part_attempts()`: Converts part attempts to XML format
- Handles hint processing and transaction generation

- **dataset/lookup.py**: Retrieves context/lookup data from S3 for Datashop processing

3. **Event Processing**:
- **dataset/event_registry.py**: Registry of event types and their processing configurations
- **dataset/attempts.py**: Processes attempt-related events
- **dataset/page_viewed.py**: Processes page view events
- **dataset/video.py**: Processes video interaction events

4. **Utilities**:
- **dataset/utils.py**: Common utility functions (encoding, parallel processing, field pruning)
- **dataset/manifest.py**: Generates HTML/JSON manifests for datasets

### Data Flow

1. Job receives parameters (section IDs, event types, etc.)
2. Retrieves file keys from S3 inventory based on section IDs
3. Processes files in parallel chunks using Spark
4. For Datashop: Groups results by user/session, sorts by page/activity/part hierarchy
5. Outputs results to S3 as CSV or XML chunks

### Key Processing Features

- **Chunked Processing**: Handles large datasets by processing in configurable chunk sizes
- **Parallel Processing**: Uses Spark's parallel_map for distributed processing
- **Field Exclusion**: Supports excluding specific fields from output
- **Anonymization**: Can anonymize student IDs if configured
- **Multi-format Output**: Supports CSV and Datashop XML formats

## AWS Infrastructure Requirements

- **S3 Buckets**:
- Source bucket for xAPI data (e.g., `torus-xapi-prod`)
- Inventory bucket for S3 inventory data
- Results bucket for datasets (e.g., `torus-datasets-prod`)
- Analytics jobs bucket for scripts and logs

- **EMR Serverless**: Application configured with custom Docker image containing Python dependencies

- **IAM Role**: EMR execution role with S3 access permissions

## Dependencies

Main Python packages (from requirements.txt):
- pyspark==3.5.3
- boto3==1.35.73
- pandas==2.2.3
- numpy==2.1.3
49 changes: 49 additions & 0 deletions Makefile
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# Dataset Processing Test Commands

.PHONY: test test-core test-all test-coverage help

# Python command (uses virtual env if available, otherwise system python)
PYTHON_CMD = $(shell if [ -d "env" ]; then echo "source env/bin/activate &&"; fi) python

# Activate virtual environment and run core tests
test-core:
@echo "Running core module tests..."
$(PYTHON_CMD) -m unittest tests.test_utils tests.test_event_registry tests.test_lookup tests.test_manifest tests.test_keys -v

# Run all tests
test-all:
@echo "Running all tests..."
$(PYTHON_CMD) -m unittest discover tests -v

# Run specific test module
test-utils:
$(PYTHON_CMD) -m unittest tests.test_utils -v

test-lookup:
$(PYTHON_CMD) -m unittest tests.test_lookup -v

test-datashop:
$(PYTHON_CMD) -m unittest tests.test_datashop -v

# Default test command
test: test-core

# Setup development environment
setup:
python -m venv env
source env/bin/activate && pip install -r requirements.txt

# Clean up
clean:
find . -type d -name "__pycache__" -exec rm -rf {} +
find . -type f -name "*.pyc" -delete

help:
@echo "Available commands:"
@echo " make test - Run core module tests (default)"
@echo " make test-core - Run core module tests"
@echo " make test-all - Run all tests"
@echo " make test-utils - Run utils tests only"
@echo " make setup - Setup development environment"
@echo " make clean - Clean Python cache files"
@echo " make help - Show this help message"
71 changes: 67 additions & 4 deletions README.md
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Expand Up @@ -7,10 +7,73 @@ for executing within AWS EMR Serverless.
---

## Table of Contents
1. [Deployment](#deployment)
2. [Running the PySpark Job](#running-the-pyspark-job)
3. [Updating the Custom Docker Image](#updating-the-custom-docker-image)
4. [Requirements](#requirements)
1. [Development](#development)
2. [Testing](#testing)
3. [Deployment](#deployment)
4. [Running the PySpark Job](#running-the-pyspark-job)
5. [Updating the Custom Docker Image](#updating-the-custom-docker-image)
6. [Requirements](#requirements)

---

## Development

### Setup Development Environment
```bash
# Clone the repository
git clone <repository-url>
cd dataset

# Setup virtual environment and install dependencies
make setup
# OR manually:
python -m venv env
source env/bin/activate
pip install -r requirements.txt
```

## Testing

This project has comprehensive unit test coverage (85-90%) across all major components.

### Quick Test Commands

```bash
# Run core module tests (recommended)
make test

# Run all tests
make test-all

# Run specific test modules
make test-utils
make test-lookup
```

### Alternative Test Commands

```bash
# Using Python script
python run_tests.py core # Core modules
python run_tests.py all # All tests
python run_tests.py utils # Utils only

# Using npm (if Node.js available)
npm test # Core modules
npm run test:all # All tests

# Manual commands
source env/bin/activate && python -m unittest tests.test_utils tests.test_event_registry tests.test_lookup tests.test_manifest tests.test_keys -v
```

### Test Coverage

- ✅ **Core Infrastructure**: utils, event_registry (100%)
- ✅ **Data Processing**: lookup, keys, manifest (100%)
- ✅ **Event Handlers**: attempts, page_viewed, video
- ✅ **Datashop Processing**: XML generation, sanitization
- ✅ **Integration**: End-to-end workflows
- ✅ **Edge Cases**: Error handling, malformed data

---

Expand Down
42 changes: 0 additions & 42 deletions deploy.sh

This file was deleted.

15 changes: 15 additions & 0 deletions package.json
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{
"name": "dataset-processing",
"version": "1.0.0",
"description": "PySpark dataset processing for educational analytics",
"scripts": {
"test": "source env/bin/activate && python -m unittest tests.test_utils tests.test_event_registry tests.test_lookup tests.test_manifest tests.test_keys -v",
"test:all": "source env/bin/activate && python -m unittest discover tests -v",
"test:utils": "source env/bin/activate && python -m unittest tests.test_utils -v",
"test:core": "source env/bin/activate && python -m unittest tests.test_utils tests.test_event_registry tests.test_lookup tests.test_manifest tests.test_keys -v",
"setup": "python -m venv env && source env/bin/activate && pip install -r requirements.txt"
},
"keywords": ["pyspark", "analytics", "data-processing"],
"author": "Your Team",
"license": "MIT"
}
65 changes: 65 additions & 0 deletions run_tests.py
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#!/usr/bin/env python3
"""
Test runner script for dataset processing project.
Usage: python run_tests.py [test_type]
"""

import sys
import subprocess
import os

def run_command(command, description):
"""Run a shell command and print the description."""
print(f"\n🧪 {description}")
print("=" * 60)
result = subprocess.run(command, shell=True, cwd=os.path.dirname(os.path.abspath(__file__)))
return result.returncode == 0

def main():
test_type = sys.argv[1] if len(sys.argv) > 1 else "core"

# Ensure we're in the project directory
project_dir = os.path.dirname(os.path.abspath(__file__))
os.chdir(project_dir)

commands = {
"core": {
"cmd": "source env/bin/activate && python -m unittest tests.test_utils tests.test_event_registry tests.test_lookup tests.test_manifest tests.test_keys -v",
"desc": "Running core module tests"
},
"all": {
"cmd": "source env/bin/activate && python -m unittest discover tests -v",
"desc": "Running all tests"
},
"utils": {
"cmd": "source env/bin/activate && python -m unittest tests.test_utils -v",
"desc": "Running utils tests"
},
"lookup": {
"cmd": "source env/bin/activate && python -m unittest tests.test_lookup -v",
"desc": "Running lookup tests"
},
"datashop": {
"cmd": "source env/bin/activate && python -m unittest tests.test_datashop -v",
"desc": "Running datashop tests"
}
}

if test_type not in commands:
print(f"❌ Unknown test type: {test_type}")
print("\nAvailable test types:")
for cmd_name, cmd_info in commands.items():
print(f" {cmd_name:10} - {cmd_info['desc']}")
sys.exit(1)

cmd_info = commands[test_type]
success = run_command(cmd_info["cmd"], cmd_info["desc"])

if success:
print(f"\n✅ {cmd_info['desc']} completed successfully!")
else:
print(f"\n❌ {cmd_info['desc']} failed!")
sys.exit(1)

if __name__ == "__main__":
main()
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