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Merged
danielnachun merged 4 commits into from
Sep 4, 2025
Merged

fix build #104

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9414f26
fix build
danielnachun Sep 4, 2025
5df7f16
fix build
danielnachun Sep 4, 2025
b8d7eea
fix build
danielnachun Sep 4, 2025
c71c5bb
fix build
danielnachun Sep 4, 2025
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18 changes: 9 additions & 9 deletions .github/environment/pixi.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,15 +7,15 @@ platforms = ["linux-64", "osx-64", "osx-arm64"]
libc = { family="glibc", version="2.17" }

[tasks]
devtools_document = "R -e 'devtools::document()'"
devtools_test = "R -e 'devtools::test()'"
codecov = "R -e 'covr::codecov(quiet = FALSE)'"
build = "R -e 'devtools::build()'"
rcmdcheck = "R -e 'pkg <- list.files(\"..\", pattern = \".tar.gz\", full.names = TRUE); rcmdcheck::rcmdcheck(path = pkg[1], args = c(\"--as-cran\", \"--no-manual\"))'"
use_major_version = "R -e 'usethis::Use_version(which = \"major\", push = FALSE)'"
use_minor_version = "R -e 'usethis::use_version(which = \"minor\", push = FALSE)'"
use_patch_version = "R -e 'usethis::use_version(which = \"patch\", push = FALSE)'"
pkgdown_build = "R -e 'pkgdown::build_site_github_pages(new_process = FALSE, install = TRUE)'"
devtools_document = "cd $GITHUB_WORKSPACE; R -e 'devtools::document()'"
devtools_test = "cd $GITHUB_WORKSPACE; R -e 'devtools::test()'"
codecov = "cd $GITHUB_WORKSPACE; R -e 'covr::codecov(quiet = FALSE)'"
build = "cd $GITHUB_WORKSPACE; R -e 'devtools::build()'"
rcmdcheck = "cd $GITHUB_WORKSPACE; R -e 'pkg <- list.files(\"..\", pattern = \".tar.gz\", full.names = TRUE); rcmdcheck::rcmdcheck(path = pkg[1], args = c(\"--as-cran\", \"--no-manual\"))'"
use_major_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::Use_version(which = \"major\", push = FALSE)'"
use_minor_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"minor\", push = FALSE)'"
use_patch_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"patch\", push = FALSE)'"
pkgdown_build = "cd $GITHUB_WORKSPACE; R -e 'pkgdown::build_site_github_pages(new_process = FALSE, install = TRUE)'"

[feature.r43]
dependencies = {"r-base" = "4.3.*"}
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44 changes: 28 additions & 16 deletions .github/workflows/ci.yml
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Expand Up @@ -25,24 +25,26 @@ jobs:
fetch-depth: 0

- name: Create TOML from recipe
run: .github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
run: |
.github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
mkdir /tmp/pixi
mv ${GITHUB_WORKSPACE}/pixi.toml /tmp/pixi

- name: Setup pixi
uses: prefix-dev/setup-pixi@v0.8.14
with:
manifest-path: /tmp/pixi/pixi.toml

- name: Run unit tests
run: pixi run --environment ${{ matrix.environment }} devtools_test
run: pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml devtools_test

- name: Run R CMD CHECK
run: |
pixi install --environment ${{ matrix.environment }}
ln -sf $(pwd)/.pixi/envs/default/lib/libhwasan.so.0 $(pwd)/.pixi/envs/default/lib/libhwasan.so
ln -sf $(pwd)/.pixi/envs/${{ matrix.environment }}/lib/libhwasan.so.0 $(pwd)/.pixi/envs/${{ matrix.environment }}/lib/libhwasan.so
pixi run --environment ${{ matrix.environment }} build
pixi run --environment ${{ matrix.environment }} rcmdcheck
pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml build
pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml rcmdcheck

- name: Check unit test code coverage
run: pixi run --environment ${{ matrix.environment }} codecov
run: pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml codecov

ci_osx-64:
name: osx-64 CI
Expand All @@ -59,18 +61,23 @@ jobs:
fetch-depth: 0

- name: Create TOML from recipe
run: .github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
run: |
.github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
mkdir /tmp/pixi
mv ${GITHUB_WORKSPACE}/pixi.toml /tmp/pixi

- name: Setup pixi
uses: prefix-dev/setup-pixi@v0.8.14
with:
manifest-path: /tmp/pixi/pixi.toml

- name: Run unit tests
run: pixi run --environment ${{ matrix.environment }} devtools_test
run: pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml devtools_test

- name: Run R CMD CHECK
run: |
pixi run --environment ${{ matrix.environment }} build
pixi run --environment ${{ matrix.environment }} rcmdcheck
pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml build
pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml rcmdcheck

ci_osx-arm64:
name: osx-arm64 CI
Expand All @@ -87,15 +94,20 @@ jobs:
fetch-depth: 0

- name: Create TOML from recipe
run: .github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
run: |
.github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
mkdir /tmp/pixi
mv ${GITHUB_WORKSPACE}/pixi.toml /tmp/pixi

- name: Setup pixi
uses: prefix-dev/setup-pixi@v0.8.14
with:
manifest-path: /tmp/pixi/pixi.toml

- name: Run unit tests
run: pixi run --environment ${{ matrix.environment }} devtools_test
run: pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml devtools_test

- name: Run R CMD CHECK
run: |
pixi run --environment ${{ matrix.environment }} build
pixi run --environment ${{ matrix.environment }} rcmdcheck
pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml build
pixi run --environment ${{ matrix.environment }} --manifest-path /tmp/pixi/pixi.toml rcmdcheck