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Merged
xueweic merged 3 commits into from
Apr 17, 2025
Merged

check unit test #56

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9649154
unit test reinstall
xueweic Apr 17, 2025
aca1533
Merge branch 'main' of https://github.com/xueweic/colocboost
xueweic Apr 17, 2025
1e26884
Merge branch 'StatFunGen:main' into main
xueweic Apr 17, 2025
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2 changes: 1 addition & 1 deletion R/colocboost_init.R
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Original file line number Diff line number Diff line change
Expand Up @@ -614,7 +614,7 @@ process_individual_data <- function(X, Y, dict_YX, target_variants,
ind_id_Y <- rownames(Y[[i]])
ind_id_X <- rownames(X[[current_matrix_type]])
if (is.null(ind_id_X) || is.null(ind_id_Y)) {
stop("Please provide the sample index of X and Y, since they do not have the same sample size!")
stop("Please provide the sample index of X and Y, since they do not have the same samples!")
}
# Find matching samples
pos <- match(ind_id_Y, ind_id_X)
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2 changes: 1 addition & 1 deletion tests/testthat/test_colocboost.R
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Expand Up @@ -241,5 +241,5 @@ test_that("colocboost handles missing/invalid inputs appropriately", {
Y_list <- list(test_data$Y[,1], test_data$Y[,2])
X_list <- list(X_bad, X_bad)

expect_error(colocboost(X = X_list, Y = Y_list), "do not have the same sample size")
expect_error(colocboost(X = X_list, Y = Y_list), "Please provide the sample index of X and Y, since they do not have the same samples!")
})
4 changes: 2 additions & 2 deletions tests/testthat/test_corner_cases.R
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Expand Up @@ -87,7 +87,7 @@ test_that("colocboost handles missing values in Y", {
X_list <- list(test_data$X, test_data$X)

# Run colocboost - should handle NAs automatically
expect_warning(
expect_error(
result <- colocboost(
X = X_list,
Y = Y_list,
Expand All @@ -110,7 +110,7 @@ test_that("colocboost handles different sample sizes", {
# Run colocboost - should error without sample indices
expect_error(
colocboost(
X = test_data$X[1],
X = test_data$X,
Y = test_data$Y
)
)
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