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minor fix - ctwas p0 p1 #398

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Merged
gaow merged 1 commit into from
Jun 11, 2025
Merged

minor fix - ctwas p0 p1 #398

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5 changes: 5 additions & 0 deletions R/ctwas_wrapper.R
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Original file line number Diff line number Diff line change
Expand Up @@ -104,6 +104,11 @@ trim_ctwas_variants <- function(region_data, twas_weight_cutoff = 1e-5, cs_min_c
region_data$weights[[group]][[study]]$n_wgt <- nrow(region_data$weights[[group]][[study]]$wgt)
}
region_data$weights[[group]] <- Filter(Negate(is.null), region_data$weights[[group]])
context_range <- as.integer(sapply(rownames(region_data$weights[[group]][[study]]$wgt), function(variant) strsplit(variant, "\\:")[[1]][2]))
if(twas_weight_cutoff!=0 | cs_min_cor!=0 | min_pip_cutoff!=0 | max_num_variants!=Inf){
region_data$weights[[group]][[study]][["p0"]] = min(context_range)# update min max position
region_data$weights[[group]][[study]][["p1"]] = max(context_range)
}
}
return(region_data$weights[[group]])
}), names(region_data$weights))
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