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Apply column mapping to twas pipeline#402

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gaow merged 3 commits intoStatFunGen:mainfrom
rl3328:main
Jun 20, 2025
Merged

Apply column mapping to twas pipeline#402
gaow merged 3 commits intoStatFunGen:mainfrom
rl3328:main

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@rl3328 rl3328 commented Jun 20, 2025

  1. When loading GWAS summary statistics, specifying a column_file_path (YAML format) enables the use of load_rss_data(). This function standardizes column names and can flexibly generate missing "z" or "beta" columns using the col_to_flip option. Whereas when column_file_path not provided, it uses the default simple and computationally efficient tabix_region().
  2. Add --comment-string , which comes with load_rss_data()

@gaow gaow merged commit 4745a55 into StatFunGen:main Jun 20, 2025
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